Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t07178Z Brassica rapa HOM05D000104 ORTHO05D042696 2.7e-32 141.4 69 100.0
A02p21650 Brassica napus HOM05D000104 ORTHO05D042696 1.8e-20 102.1 53 96.2
BolC2t09515H Brassica oleracea HOM05D000526 ORTHO05D000956 8.7e-15 83.2 44 88.6
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 3.8e-10 67.8 51 82.4
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 3.8e-10 67.8 51 82.4
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 3.8e-10 67.8 51 82.4
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 3.8e-10 67.8 51 82.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 3.8e-10 67.8 51 82.4
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 80.4
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 80.4
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 1.4e-09 65.9 51 80.4
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 2.4e-09 65.1 63 66.7
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 3.2e-09 64.7 51 78.4
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 5.4e-09 63.9 63 66.7
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 1.6e-08 62.4 51 74.5
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 2.1e-08 62.0 51 74.5
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 2.1e-08 62.0 51 72.5
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 2.7e-08 61.6 57 71.9
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 2.7e-08 61.6 57 71.9
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 2.7e-08 61.6 57 71.9
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.7e-08 61.6 57 71.9
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 2.7e-08 61.6 57 71.9
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 4.6e-08 60.8 57 71.9
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 4.6e-08 60.8 57 70.2
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 4.6e-08 60.8 51 72.5
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 4.6e-08 60.8 51 72.5
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 6.0e-08 60.5 51 72.5
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 6.0e-08 60.5 51 72.5
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 6.0e-08 60.5 51 72.5
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 6.0e-08 60.5 51 72.5
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 6.0e-08 60.5 57 70.2
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 7.9e-08 60.1 57 70.2
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 7.9e-08 60.1 57 70.2
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 7.9e-08 60.1 57 70.2
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 7.9e-08 60.1 57 70.2
SHI48772 Sapria himalayana HOM05D000024 ORTHO05D000007 7.9e-08 60.1 51 70.6
Cpa.g.sc16.94 Carica papaya HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 70.6
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.0e-07 59.7 57 70.2
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 1.0e-07 59.7 57 70.2
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 72.5
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 70.6
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 70.6
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 70.6
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 70.6
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 1.0e-07 59.7 51 72.5
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-07 59.3 51 70.6
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 1.3e-07 59.3 51 70.6
AUR62040387 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 70.2
AUR62042659 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 70.2
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 70.2
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 1.3e-07 59.3 51 70.6
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
SEGI_16038 Sequoiadendron giganteum HOM05D000104 ORTHO05D005604 1.3e-07 59.3 57 68.4
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.8e-07 58.9 57 68.4
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.8e-07 58.9 51 70.6
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 1.8e-07 58.9 59 69.5
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 1.8e-07 58.9 57 68.4
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 2.3e-07 58.5 51 70.6
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 2.3e-07 58.5 51 70.6
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 2.3e-07 58.5 51 70.6
Actinidia06888 Actinidia chinensis HOM05D000104 ORTHO05D005604 3.0e-07 58.2 50 72.0
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 68.6
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 70.6
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 3.0e-07 58.2 57 68.4
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 3.0e-07 58.2 57 68.4
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 3.0e-07 58.2 57 68.4
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 3.0e-07 58.2 56 69.6
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 70.6
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 70.6
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 68.6
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 3.0e-07 58.2 51 68.6
vmacro04192 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 3.0e-07 58.2 57 68.4
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 3.9e-07 57.8 51 70.6
Gohir.A09G233000 Gossypium hirsutum HOM05D000104 ORTHO05D005604 3.9e-07 57.8 56 67.9
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 3.9e-07 57.8 56 67.9
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 3.9e-07 57.8 56 67.9
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 3.9e-07 57.8 57 68.4
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 3.9e-07 57.8 57 66.7
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 5.1e-07 57.4 57 68.4
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 5.1e-07 57.4 57 68.4
TAR365G0333 Trochodendron aralioides HOM05D000104 ORTHO05D005604 5.1e-07 57.4 57 68.4
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 6.7e-07 57.0 57 68.4
MBI19_g34714_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 6.7e-07 57.0 51 66.7
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 8.7e-07 56.6 51 66.7
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 8.7e-07 56.6 50 70.0
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 8.7e-07 56.6 57 66.7
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 8.7e-07 56.6 57 66.7
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 8.7e-07 56.6 57 68.4
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 1.9e-06 55.5 57 66.7
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 2.5e-06 55.1 57 64.9
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 2.5e-06 55.1 57 66.7
Oeu007474.1 Olea europaea HOM05D000104 ORTHO05D005604 3.3e-06 54.7 51 66.7
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 4.3e-06 54.3 57 63.2
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 4.3e-06 54.3 57 64.9


User provided reference genes

Program Settings