Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC46t61020H Brassica oleracea HOM05D000964 ORTHO05D004047 5.4e-30 133.7 67 100.0
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 1.1e-22 109.4 64 87.5
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC29t60526H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC35t60667H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC35t60732H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
BraSC59t46573Z Brassica rapa HOM05D000964 ORTHO05D004047 1.4e-22 109.0 64 87.5
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 3.2e-22 107.8 64 85.9
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 3.2e-22 107.8 64 85.9
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 3.2e-22 107.8 64 85.9
BolC7t41711H Brassica oleracea HOM05D000964 ORTHO05D004047 4.2e-22 107.5 64 85.9
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 7.1e-22 106.7 64 85.9
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 7.1e-22 106.7 64 85.9
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 1.6e-21 105.5 64 84.4
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 2.7e-21 104.8 64 84.4
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 2.7e-21 104.8 64 84.4
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 2.7e-21 104.8 64 84.4
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
Solyc00g500029.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
Solyc00g500074.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 3.5e-21 104.4 64 84.4
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
Lsat_1_v5_gn_3_85700 Lactuca sativa HOM05D000964 ORTHO05D004047 6.0e-21 103.6 64 82.8
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 7.9e-21 103.2 64 82.8
arahy.Tifrunner.gnm1.ann1.ND6SCQ Arachis hypogaea HOM05D000964 ORTHO05D004047 1.0e-20 102.8 64 81.2
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 1.0e-20 102.8 64 81.2
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.0e-20 102.8 64 82.8
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 1.3e-20 102.4 64 79.7
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 1.8e-20 102.1 64 81.2
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.3e-20 101.7 64 81.2
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 3.0e-20 101.3 64 81.2
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 3.9e-20 100.9 64 79.7
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 3.9e-20 100.9 64 79.7
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 3.9e-20 100.9 64 81.2
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 5.1e-20 100.5 63 79.4
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 5.1e-20 100.5 64 79.7
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 5.1e-20 100.5 64 79.7
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 8.7e-20 99.8 64 79.7
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 8.7e-20 99.8 62 82.3
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 1.1e-19 99.4 64 78.1
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-19 98.6 66 80.3
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-19 98.6 66 80.3
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-19 98.6 66 80.3
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-19 98.6 66 80.3
Gohir.D07G135300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-19 98.6 66 80.3
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 2.5e-19 98.2 64 78.1
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 3.3e-19 97.8 62 79.0
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 3.3e-19 97.8 64 76.6
arahy.Tifrunner.gnm1.ann1.Z4WADK Arachis hypogaea HOM05D000964 ORTHO05D004047 4.3e-19 97.4 64 78.1
BraSC103t45447Z Brassica rapa HOM05D000964 ORTHO05D004047 4.3e-19 97.4 60 81.7
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 4.3e-19 97.4 60 81.7
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 4.3e-19 97.4 60 81.7
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 62 79.0
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 62 79.0
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 62 79.0
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 64 75.0
Hund28677 Selenicereus undatus HOM05D000964 ORTHO05D003870 5.6e-19 97.1 64 75.0
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 64 75.0
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 64 75.0
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 64 75.0
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.6e-19 97.1 64 75.0
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 7.4e-19 96.7 65 80.0
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 9.6e-19 96.3 61 80.3
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 1.6e-18 95.5 62 75.8
TAR629G2589 Trochodendron aralioides HOM05D000964 ORTHO05D004047 2.1e-18 95.1 64 75.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.8e-18 94.7 60 80.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.8e-18 94.7 60 80.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 2.8e-18 94.7 60 80.0
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 2.8e-18 94.7 60 80.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.8e-18 94.7 60 80.0
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 2.8e-18 94.7 61 80.3
EL10As15g24109 Beta vulgaris HOM05D000964 ORTHO05D004047 8.1e-18 93.2 63 76.2
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 8.1e-18 93.2 62 75.8
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 8.1e-18 93.2 64 76.6
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 8.1e-18 93.2 64 76.6
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 8.1e-18 93.2 64 76.6
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 1.4e-17 92.4 64 71.9
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 1.4e-17 92.4 64 71.9
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 1.4e-17 92.4 64 71.9
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 1.4e-17 92.4 64 71.9
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 1.4e-17 92.4 64 71.9
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 1.8e-17 92.0 63 76.2
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 5.3e-17 90.5 63 69.8
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.3e-17 90.5 64 73.4
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 6.9e-17 90.1 63 73.0
GSVIVG01024860001 Vitis vinifera HOM05D000964 ORTHO05D004047 9.0e-17 89.7 65 70.8
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 1.5e-16 89.0 61 73.8
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.8e-16 87.0 62 74.2
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 1.7e-15 85.5 62 72.6
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 1.1e-14 82.8 51 80.4
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 1.1e-14 82.8 51 80.4
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 1.1e-14 82.8 51 80.4
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 1.1e-14 82.8 50 82.0
SalBow1G3145 Salvia bowleyana HOM05D000964 ORTHO05D003870 1.1e-14 82.8 63 68.3
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.4e-14 82.4 50 82.0
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 1.9e-14 82.0 54 77.8
vmacro22401 Vaccinium macrocarpon HOM05D000964 ORTHO05D004047 2.4e-14 81.6 63 68.3
vmacro22426 Vaccinium macrocarpon HOM05D000964 ORTHO05D004047 2.4e-14 81.6 63 68.3
Nitab4.5_0027992g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 4.2e-14 80.9 51 76.5
Solyc08g081560.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.2e-13 79.3 55 74.5
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 8.7e-12 73.2 64 64.1
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.5e-11 71.6 63 63.5
DCAR_022734 Daucus carota HOM05D000964 ORTHO05D004047 2.1e-10 68.6 54 66.7
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 6.2e-10 67.0 59 61.0
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 1.4e-09 65.9 44 77.3
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 3.1e-09 64.7 60 55.0
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 6.9e-09 63.5 48 64.6
Nitab4.5_0000477g0110 Nicotiana tabacum HOM05D000964 ORTHO05D003870 6.9e-09 63.5 44 70.5
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 2.6e-08 61.6 40 77.5
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 7.6e-08 60.1 44 70.5
BolSC47t61077H Brassica oleracea HOM05D000964 ORTHO05D004047 1.0e-07 59.7 39 79.5
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.7e-07 58.9 29 93.1
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 4.9e-07 57.4 27 100.0
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.1e-06 56.2 27 96.3
Nn5g28714 Nelumbo nucifera HOM05D000964 ORTHO05D004047 1.4e-06 55.8 27 96.3
C04p22570 Brassica napus HOM05D000964 ORTHO05D004047 1.9e-06 55.5 26 100.0
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.9e-06 55.5 42 66.7
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 3.2e-06 54.7 51 45.1
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.2e-06 54.7 27 92.6
Atru.chr4.2439 Acer truncatum HOM05D000964 ORTHO05D003870 4.2e-06 54.3 26 96.2
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 4.2e-06 54.3 26 96.2


User provided reference genes

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