Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.5e-144 516.2 256 100.0
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.6e-141 505.4 256 98.0
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.3e-84 317.0 246 69.9
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.5e-80 303.5 246 68.3
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.5e-80 303.5 246 68.3
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 2.0e-80 303.1 246 67.9
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.0e-76 290.8 248 64.1
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.0e-76 289.3 254 63.4
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 3.0e-76 289.3 254 63.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.1e-74 283.1 259 62.2
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.8e-74 282.7 254 62.2
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 1.2e-72 277.3 259 60.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.7e-71 273.5 249 59.8
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.6e-69 266.9 249 59.0
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 2.1e-69 266.5 251 60.6
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 4.6e-69 265.4 246 60.2
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 6.2e-66 255.0 249 56.6
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.2e-61 240.7 259 54.8
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.3e-60 237.3 251 53.8
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.8e-55 219.2 249 49.0
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.9e-52 209.1 217 51.6
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.4e-49 199.9 251 47.8
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.8e-47 192.6 243 47.3
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.2e-46 189.1 262 42.0
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 5.4e-46 188.7 255 43.5
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 7.1e-46 188.3 260 41.9
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.3e-46 188.0 258 41.9
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 9.3e-46 188.0 255 44.3
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.1e-45 186.8 245 42.9
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 2.1e-45 186.8 261 44.4
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.7e-45 186.4 254 44.1
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 7.8e-45 184.9 308 38.3
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.0e-44 184.5 261 42.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.7e-44 183.7 255 42.4
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 1.7e-44 183.7 261 44.1
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.7e-44 183.7 245 44.5
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 2.3e-44 183.3 255 40.8
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.0e-44 183.0 261 41.8
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.6e-44 181.8 262 41.6
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 8.7e-44 181.4 255 43.1
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 8.7e-44 181.4 258 43.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 8.7e-44 181.4 255 40.4
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 8.7e-44 181.4 255 40.4
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.1e-43 181.0 260 43.1
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.1e-43 181.0 255 42.7
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 1.1e-43 181.0 261 42.9
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.5e-43 180.6 254 42.5
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.5e-43 180.6 254 42.9
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.9e-43 180.3 271 42.8
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.5e-43 179.9 260 41.5
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.3e-43 179.5 255 39.6
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.3e-43 179.5 244 42.6
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 4.3e-43 179.1 252 41.3
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 4.3e-43 179.1 252 41.3
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 5.6e-43 178.7 252 41.7
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 9.6e-43 177.9 261 43.3
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.6e-42 177.2 245 41.2
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 2.1e-42 176.8 251 40.2
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 2.1e-42 176.8 253 43.5
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 2.1e-42 176.8 252 41.7
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.6e-42 176.0 241 41.9
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 3.6e-42 176.0 255 41.2
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 4.8e-42 175.6 258 41.9
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 4.8e-42 175.6 262 41.2
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 6.2e-42 175.3 253 41.9
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 6.2e-42 175.3 257 41.2
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 8.1e-42 174.9 255 42.0
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 8.1e-42 174.9 245 40.4
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 8.1e-42 174.9 252 41.3
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.1e-41 174.5 248 39.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.1e-41 174.5 253 41.9
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.1e-41 174.5 249 41.8
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.4e-41 174.1 260 41.5
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.4e-41 174.1 253 39.9
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.8e-41 173.7 250 41.2
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 3.1e-41 172.9 252 39.7
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 5.3e-41 172.2 254 39.8
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 5.3e-41 172.2 253 41.5
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 5.3e-41 172.2 249 42.6
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 9.0e-41 171.4 252 43.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.2e-40 171.0 253 40.3
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.2e-40 171.0 252 39.3
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.2e-40 171.0 251 39.4
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 1.5e-40 170.6 252 42.5
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.5e-40 170.6 257 40.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 2.0e-40 170.2 258 39.9
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.6e-40 169.9 252 41.3
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.6e-40 169.9 253 41.1
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.6e-40 169.9 310 36.1
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.6e-40 169.9 258 39.9
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.4e-40 169.5 262 39.3
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 4.5e-40 169.1 251 41.8
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 9.9e-40 167.9 255 40.0
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.3e-39 167.5 258 39.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 1.3e-39 167.5 259 40.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.8e-39 166.0 252 39.3
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.8e-39 166.0 255 39.6
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 6.4e-39 165.2 255 40.8
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 6.4e-39 165.2 255 39.2
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.4e-39 164.9 262 38.5
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.1e-38 164.5 257 39.3
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.4e-38 164.1 248 39.5
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.2e-38 162.9 242 38.4
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 4.2e-38 162.5 250 39.2
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 5.4e-38 162.2 262 39.3
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 9.3e-38 161.4 251 37.8
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 9.3e-38 161.4 250 38.8
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.0e-36 157.9 255 38.8
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 1.3e-36 157.5 255 38.0
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.8e-36 157.1 249 39.4
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.7e-36 155.2 251 39.0
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 8.7e-36 154.8 251 37.5
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.9e-35 153.7 274 36.9
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 4.0e-33 146.0 221 40.3
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 6.9e-33 145.2 260 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.9e-30 137.1 272 34.2
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 2.5e-30 136.7 215 36.7
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.2e-30 136.3 121 61.2
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 4.2e-30 136.0 259 35.5
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 9.3e-30 134.8 257 35.8
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 6.0e-29 132.1 262 36.3
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 7.1e-22 108.6 296 27.4
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 7.9e-21 105.1 255 29.8
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 8.7e-20 101.7 121 51.2
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.5e-19 100.1 117 42.7
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 4.3e-19 99.4 98 56.1
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 6.9e-17 92.0 107 51.4
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 9.0e-17 91.7 87 56.3
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.2e-16 91.3 164 34.1
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.7e-15 87.4 99 51.5
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 7.2e-14 82.0 228 28.9
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.8e-12 77.4 142 32.4
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.8e-12 75.1 53 62.3
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.8e-09 67.4 118 39.0
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 9.1e-09 65.1 253 23.7


User provided reference genes

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