Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38904H Brassica oleracea HOM05D005620 ORTHO05D002193 3.9e-44 181.0 89 100.0
BolC7t42658H Brassica oleracea HOM05D005620 ORTHO05D002193 6.1e-37 157.1 90 86.7
BcaC06g34961 Brassica carinata HOM05D005620 ORTHO05D002193 8.8e-36 153.3 100 80.0
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 2.6e-32 141.7 94 78.7
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 2.6e-32 141.7 94 78.7
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 2.6e-32 141.7 94 78.7
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 5.9e-32 140.6 94 77.7
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 1.0e-31 139.8 94 78.7
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 2.2e-31 138.7 94 74.5
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 1.1e-30 136.3 94 76.6
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 1.1e-30 136.3 94 76.6
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 1.5e-30 136.0 94 74.5
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 1.9e-30 135.6 94 72.3
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 2.5e-30 135.2 94 74.5
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 5.5e-30 134.0 94 75.5
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 5.5e-30 134.0 94 75.5
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 2.1e-29 132.1 94 70.2
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 2.7e-29 131.7 94 73.4
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 4.7e-29 131.0 94 74.5
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 1.8e-28 129.0 94 73.4
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 5.2e-28 127.5 114 62.3
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 7.5e-27 123.6 94 67.0
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 8.3e-26 120.2 94 64.9
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 1.8e-25 119.0 94 63.8
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 2.4e-25 118.6 94 64.9
Hma1.2p1_0056F.1_g031590 Hydrangea macrophylla HOM05D005620 ORTHO05D002193 3.1e-25 118.2 93 67.7
Nn7g36440 Nelumbo nucifera HOM05D005620 ORTHO05D002193 4.1e-25 117.9 94 63.8
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 7.0e-25 117.1 93 65.6
vmacro21954 Vaccinium macrocarpon HOM05D005620 ORTHO05D002193 7.0e-25 117.1 83 71.1
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 9.1e-25 116.7 94 62.8
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 9.1e-25 116.7 94 62.8
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 9.1e-25 116.7 94 63.8
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 9.1e-25 116.7 93 61.3
CiPaw.09G042300 Carya illinoinensis HOM05D005620 ORTHO05D002193 1.6e-24 115.9 94 63.8
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 2.0e-24 115.5 94 62.8
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 2.7e-24 115.2 94 61.7
Ca_25788_v3 Cicer arietinum L. HOM05D005620 ORTHO05D002193 3.5e-24 114.8 94 62.8
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 3.5e-24 114.8 93 63.4
Cc06_g18370 Coffea canephora HOM05D005620 ORTHO05D002193 4.5e-24 114.4 83 69.9
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 4.5e-24 114.4 94 62.8
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 4.5e-24 114.4 94 61.7
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 5.9e-24 114.0 94 61.7
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 5.9e-24 114.0 94 61.7
ATR0733G075 Amborella trichopoda HOM05D005620 ORTHO05D002193 7.7e-24 113.6 94 63.8
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 7.7e-24 113.6 94 61.7
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 1.0e-23 113.2 94 62.8
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 1.3e-23 112.8 94 62.8
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 1.3e-23 112.8 94 62.8
MSTRG.10802 Avicennia marina HOM05D005620 ORTHO05D002193 1.7e-23 112.5 94 60.6
Lj2A390T38 Lonicera japonica HOM05D005620 ORTHO05D002193 1.7e-23 112.5 106 57.5
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 1.7e-23 112.5 94 61.7
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 2.9e-23 111.7 94 62.8
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 2.9e-23 111.7 94 62.8
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 2.9e-23 111.7 94 61.7
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 5.0e-23 110.9 94 60.6
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 8.5e-23 110.2 94 59.6
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 8.5e-23 110.2 93 63.4
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 8.5e-23 110.2 94 61.7
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 8.5e-23 110.2 93 58.1
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 1.1e-22 109.8 94 61.7
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 1.1e-22 109.8 95 57.9
Peaxi162Scf00130g01016 Petunia axillaris HOM05D005620 ORTHO05D002193 1.5e-22 109.4 83 63.9
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 1.9e-22 109.0 84 65.5
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 2.5e-22 108.6 94 61.7
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 2.5e-22 108.6 93 59.1
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 2.5e-22 108.6 93 59.1
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 3.2e-22 108.2 94 58.5
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 3.2e-22 108.2 94 58.5
arahy.Tifrunner.gnm1.ann1.K8ZQW4 Arachis hypogaea HOM05D005620 ORTHO05D002193 4.2e-22 107.8 94 60.6
Nitab4.5_0000826g0250 Nicotiana tabacum HOM05D005620 ORTHO05D002193 5.5e-22 107.5 83 61.4
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 7.2e-22 107.1 94 59.6
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 9.4e-22 106.7 96 59.4
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 2.1e-21 105.5 93 58.1
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 2.1e-21 105.5 93 58.1
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 4.7e-21 104.4 93 59.1
Nitab4.5_0001618g0310 Nicotiana tabacum HOM05D005620 ORTHO05D002193 4.7e-21 104.4 83 60.2
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 1.0e-20 103.2 94 56.4
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 1.8e-20 102.4 94 58.5
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 2.3e-20 102.1 93 57.0
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 3.0e-20 101.7 93 57.0
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 3.0e-20 101.7 93 57.0
Migut.K00117 Erythranthe guttata HOM05D005620 ORTHO05D002193 4.0e-20 101.3 96 58.3
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 5.2e-20 100.9 93 54.8
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.5e-19 99.4 93 55.9
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 2.0e-19 99.0 93 53.8
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 2.0e-19 99.0 105 53.3
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 2.0e-19 99.0 108 50.9
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 2.6e-19 98.6 93 57.0
DCAR_019171 Daucus carota HOM05D005620 ORTHO05D002193 2.6e-19 98.6 113 52.2
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 3.4e-19 98.2 93 55.9
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 4.4e-19 97.8 93 64.5
BolC6t36428H Brassica oleracea HOM05D005620 ORTHO05D002193 4.4e-19 97.8 47 100.0
Gohir.D03G074900 Gossypium hirsutum HOM05D005620 ORTHO05D002193 4.4e-19 97.8 94 54.3
Gorai.003G086400 Gossypium raimondii HOM05D005620 ORTHO05D002193 4.4e-19 97.8 94 54.3
Gohir.A02G123602 Gossypium hirsutum HOM05D005620 ORTHO05D002193 7.5e-19 97.1 94 54.3
SEGI_06428 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 2.8e-18 95.1 96 55.2
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 1.4e-17 92.8 93 53.8
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 2.4e-17 92.0 94 54.3
CAN.G1237.2 Capsicum annuum HOM05D005620 ORTHO05D002193 1.6e-16 89.4 108 45.4
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 1.9e-14 82.4 97 49.5
MBI19_g08310_MAGBIO Magnolia biondii HOM05D005620 ORTHO05D002193 2.5e-14 82.0 49 77.6
SHI24582 Sapria himalayana HOM05D005620 ORTHO05D002193 1.2e-13 79.7 86 54.7
Glyma.10G105800 Glycine max HOM05D005620 ORTHO05D002193 3.6e-13 78.2 49 75.5
Pp3c14_3710 Physcomitrium patens HOM05D005620 ORTHO05D002193 4.7e-13 77.8 99 47.5
AUR62026123 Chenopodium quinoa HOM05D005620 ORTHO05D002193 1.8e-12 75.9 49 73.5
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 1.8e-12 75.9 100 43.0
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 8.9e-12 73.6 99 45.5
PGSC0003DMG403012723 Solanum tuberosum HOM05D005620 ORTHO05D002193 2.8e-10 68.6 49 65.3
Hund19124 Selenicereus undatus HOM05D005620 ORTHO05D002193 5.9e-08 60.8 83 37.3
CAN.G1442.1 Capsicum annuum HOM05D005620 ORTHO05D002193 7.8e-08 60.5 49 59.2
AUR62024530 Chenopodium quinoa HOM05D005620 ORTHO05D002193 1.3e-07 59.7 83 34.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 3.3e-06 55.1 70 44.3
QL07p005077 Quercus lobata HOM05D005620 ORTHO05D002193 5.6e-06 54.3 32 75.0
CBR_g30450 Chara braunii HOM05D005620 ORTHO05D002193 7.3e-06 53.9 80 40.0


User provided reference genes

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