Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 8.6e-126 453.8 243 100.0
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 3.4e-122 441.8 243 97.9
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 9.8e-122 440.3 244 98.0
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.7e-110 402.9 243 89.3
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 3.0e-110 402.1 243 90.1
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.2e-106 390.2 244 89.8
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 4.7e-100 368.2 243 84.4
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 2.7e-95 352.4 200 98.5
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 4.6e-95 351.7 244 81.6
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.6e-92 343.2 252 77.8
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 5.8e-90 334.7 259 75.7
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 7.9e-63 244.6 248 59.7
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 5.1e-62 241.9 248 59.3
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 3.1e-59 232.6 252 54.0
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 3.1e-59 232.6 252 57.5
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.9e-59 231.5 252 57.1
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 9.1e-59 231.1 256 55.9
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 2.6e-58 229.6 250 55.2
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 7.7e-58 228.0 252 56.3
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.7e-57 226.9 252 56.0
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 3.8e-57 225.7 261 52.1
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 5.0e-57 225.3 258 53.9
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 1.1e-56 224.2 248 56.9
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.4e-56 223.8 254 53.9
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 1.9e-56 223.4 252 55.2
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.9e-56 223.4 254 57.1
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 5.5e-56 221.9 263 55.9
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 7.2e-56 221.5 252 56.0
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 7.2e-56 221.5 252 54.8
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.2e-55 220.7 249 56.6
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.6e-55 219.2 251 56.6
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 1.0e-54 217.6 250 54.4
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.0e-54 217.6 253 54.2
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 1.0e-54 217.6 260 53.8
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.8e-54 216.9 248 56.0
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.8e-54 216.9 249 55.4
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 1.8e-54 216.9 260 53.8
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 2.3e-54 216.5 248 56.0
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.3e-54 216.5 250 54.0
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.3e-54 216.5 260 53.5
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 3.0e-54 216.1 248 56.0
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.0e-54 216.1 260 52.7
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 6.7e-54 214.9 250 55.2
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 6.7e-54 214.9 254 55.5
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 8.8e-54 214.5 244 56.6
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.1e-53 214.2 297 47.5
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 1.5e-53 213.8 261 53.3
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 2.0e-53 213.4 252 52.4
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 2.6e-53 213.0 256 54.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 3.3e-53 212.6 260 52.7
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 5.7e-53 211.8 252 54.0
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 5.7e-53 211.8 252 52.8
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 5.7e-53 211.8 254 50.8
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.7e-52 210.3 252 53.6
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 6.3e-52 208.4 147 83.7
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.4e-51 207.2 292 46.2
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 1.8e-51 206.8 251 51.4
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 1.8e-51 206.8 251 51.4
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 4.1e-51 205.7 252 54.0
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 5.3e-51 205.3 255 48.2
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 7.0e-51 204.9 251 53.0
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 7.0e-51 204.9 257 53.7
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 2.6e-50 203.0 260 50.8
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 3.5e-50 202.6 247 53.4
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 4.5e-50 202.2 241 53.9
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 4.5e-50 202.2 255 47.8
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 5.9e-50 201.8 251 47.8
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.0e-49 201.1 250 54.0
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 2.9e-49 199.5 251 53.4
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.9e-49 199.5 251 53.4
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 6.5e-49 198.4 252 53.2
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.1e-48 197.6 284 48.6
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.1e-48 197.6 252 53.6
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.5e-48 197.2 248 52.0
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.6e-47 193.7 248 50.4
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 2.7e-47 193.0 300 44.7
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.7e-47 193.0 253 50.2
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 8.0e-47 191.4 244 50.8
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 2.3e-46 189.9 264 50.4
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.3e-46 189.9 251 50.2
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 3.9e-46 189.1 250 51.6
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 2.0e-45 186.8 251 49.4
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.0e-45 186.8 248 50.8
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 1.3e-44 184.1 255 47.8
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.7e-44 183.7 251 48.6
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.2e-44 183.3 259 46.7
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 2.2e-44 183.3 275 46.9
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 4.8e-44 182.2 247 50.6
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.8e-43 180.3 252 46.4
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 4.5e-42 175.6 248 50.0
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 7.7e-42 174.9 255 46.7
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 8.8e-38 161.4 259 43.6
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.5e-37 160.6 215 52.1
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 9.1e-35 151.4 238 43.7
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 6.5e-33 145.2 244 44.7
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.6e-31 140.6 297 39.1
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 2.8e-28 129.8 236 39.4
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.4e-27 127.5 152 55.9
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 1.2e-26 124.4 291 37.5
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 4.5e-26 122.5 271 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 3.3e-24 116.3 283 34.3
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 5.5e-24 115.5 97 63.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 9.5e-24 114.8 208 45.2
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.0e-22 111.3 196 48.0
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.4e-22 110.9 108 55.6
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 6.8e-22 108.6 154 50.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 8.9e-22 108.2 183 45.9
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 7.5e-21 105.1 334 32.0
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-19 101.3 183 42.6
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 3.6e-15 86.3 67 61.2
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 2.6e-13 80.1 67 55.2
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 5.8e-13 79.0 56 66.1
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.2e-12 77.0 70 67.1
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.7e-12 76.3 176 38.1
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 9.2e-11 71.6 68 55.9
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.6e-10 70.9 145 40.0
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.6e-10 70.9 145 40.0
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 2.5e-08 63.5 68 57.4
Cre06.g309150 Chlamydomonas reinhardtii HOM05D006779 ORTHO05D008491 2.3e-06 57.0 109 31.2
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 4.0e-06 56.2 89 43.8
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 6.8e-06 55.5 50 58.0


User provided reference genes

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