Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29400H Brassica oleracea HOM05D003289 ORTHO05D004594 1.6e-45 185.7 87 100.0
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 2.9e-31 138.3 138 56.5
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 2.9e-31 138.3 138 56.5
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 4.1e-30 134.4 140 53.6
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 4.1e-30 134.4 140 53.6
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 9.2e-30 133.3 138 53.6
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.2e-29 132.9 138 55.1
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 1.2e-29 132.9 138 54.3
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.6e-29 132.5 138 54.3
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 2.1e-29 132.1 138 54.3
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.7e-29 131.7 138 54.3
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.6e-29 131.0 138 53.6
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.6e-29 131.0 138 54.3
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 7.8e-29 130.2 138 53.6
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 1.0e-28 129.8 138 52.2
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 2.3e-28 128.6 138 51.4
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 3.0e-28 128.3 138 50.7
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 3.0e-28 128.3 138 50.7
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 3.0e-28 128.3 138 51.4
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 5.1e-28 127.5 138 50.7
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 6.6e-28 127.1 138 51.4
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 6.6e-28 127.1 138 50.7
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 8.6e-28 126.7 138 51.4
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.1e-27 126.3 138 51.4
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 1.1e-27 126.3 132 50.8
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 1.1e-27 126.3 138 50.7
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 1.1e-27 126.3 138 50.7
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 1.1e-27 126.3 138 49.3
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 51.4
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 49.3
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 49.3
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 50.7
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 50.7
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 1.5e-27 125.9 138 49.3
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 1.9e-27 125.6 132 50.8
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 1.9e-27 125.6 138 50.0
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.9e-27 125.6 138 50.7
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 1.9e-27 125.6 138 50.0
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 1.9e-27 125.6 138 50.0
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.5e-27 125.2 138 49.3
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 2.5e-27 125.2 138 49.3
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 3.3e-27 124.8 138 50.0
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 3.3e-27 124.8 138 49.3
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 3.3e-27 124.8 138 50.0
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 3.3e-27 124.8 138 50.7
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 3.3e-27 124.8 138 50.0
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 49.3
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 50.7
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 50.7
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 50.0
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 50.0
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 4.3e-27 124.4 138 50.7
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 5.6e-27 124.0 132 49.2
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 5.6e-27 124.0 138 48.6
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 7.3e-27 123.6 138 49.3
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 49.3
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 50.0
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 50.7
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 50.7
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 49.3
CARHR038410 Cardamine hirsuta HOM05D003289 ORTHO05D004594 9.5e-27 123.2 138 52.2
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 9.5e-27 123.2 132 49.2
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 1.2e-26 122.9 132 50.8
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.2e-26 122.9 138 48.6
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 1.2e-26 122.9 138 49.3
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.6e-26 122.5 138 50.0
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 1.6e-26 122.5 138 48.6
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 1.6e-26 122.5 138 49.3
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 2.1e-26 122.1 138 49.3
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 2.8e-26 121.7 138 48.6
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 2.8e-26 121.7 138 48.6
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 3.6e-26 121.3 138 50.0
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 4.7e-26 120.9 138 49.3
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 4.7e-26 120.9 138 49.3
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 6.2e-26 120.6 138 48.6
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 6.2e-26 120.6 138 48.6
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 8.1e-26 120.2 138 48.6
Cpa.g.sc32.133 Carica papaya HOM05D003289 ORTHO05D004594 8.1e-26 120.2 138 47.8
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 8.1e-26 120.2 147 46.9
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.1e-25 119.8 138 49.3
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 1.1e-25 119.8 131 49.6
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 1.1e-25 119.8 144 47.2
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.4e-25 119.4 138 47.8
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.4e-25 119.4 138 47.8
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.4e-25 119.4 147 46.3
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 1.8e-25 119.0 138 47.8
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 3.1e-25 118.2 138 47.1
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 3.1e-25 118.2 138 47.8
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 4.0e-25 117.9 137 48.2
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 4.0e-25 117.9 138 47.8
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 6.8e-25 117.1 138 47.8
Ah.08g215950 Amaranthus hybridus HOM05D003289 ORTHO05D004594 8.9e-25 116.7 138 48.6
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 8.9e-25 116.7 138 47.8
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 8.9e-25 116.7 138 46.4
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 1.5e-24 115.9 138 47.8
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 1.5e-24 115.9 138 47.8
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 2.6e-24 115.2 138 47.1
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 3.4e-24 114.8 161 42.2
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 5.8e-24 114.0 138 44.2
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 9.9e-24 113.2 138 46.4
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 1.7e-23 112.5 138 44.2
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 2.2e-23 112.1 138 44.2
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 6.4e-23 110.5 140 45.7
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 1.4e-22 109.4 138 43.5
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 2.1e-21 105.5 138 42.8
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 8.6e-20 100.1 57 73.7
Nitab4.5_0003532g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.3e-19 97.8 49 85.7
Nitab4.5_0004240g0010 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.3e-19 97.8 49 85.7
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 5.6e-19 97.4 49 83.7
Peaxi162Scf00544g00915 Petunia axillaris HOM05D003289 ORTHO05D004594 9.5e-19 96.7 49 83.7
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 8.1e-18 93.6 48 83.3
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 4.0e-17 91.3 138 37.7
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 7.6e-16 87.0 137 38.7
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 8.4e-15 83.6 138 36.2
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 1.9e-11 72.4 116 39.7
Nitab4.5_0003532g0040 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.4e-08 61.2 35 85.7
Nitab4.5_0004240g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.4e-08 61.2 35 85.7
HanXRQChr09g0249461 Helianthus annuus HOM05D003289 ORTHO05D004594 9.9e-08 60.1 37 78.4
Solyc11g067110.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 2.2e-07 58.9 35 82.9
MBI15_g40424_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 3.8e-07 58.2 36 75.0
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 8.4e-07 57.0 36 77.8
Zm00001eb179700 Zea mays HOM05D003289 ORTHO05D004594 1.1e-06 56.6 35 80.0
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 3.2e-06 55.1 28 92.9
Peaxi162Scf00544g00922 Petunia axillaris HOM05D003289 ORTHO05D004594 5.4e-06 54.3 30 83.3


User provided reference genes

Program Settings