Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.6e-166 587.8 290 100.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-151 537.0 290 91.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-151 537.0 290 91.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-151 537.0 290 91.4
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-149 533.5 290 91.0
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.9e-149 531.6 290 91.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-147 526.2 291 90.7
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-145 519.2 291 89.3
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 9.9e-145 516.9 293 89.4
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-143 511.9 305 85.6
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-142 508.4 251 98.8
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 8.4e-136 487.3 239 100.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.4e-128 461.1 293 80.9
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-127 458.8 293 80.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 7.9e-126 454.1 290 81.0
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 7.6e-105 384.4 286 69.6
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 4.1e-98 362.1 289 65.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 4.1e-98 362.1 289 65.4
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 6.9e-98 361.3 288 64.9
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 5.9e-97 358.2 289 64.7
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 6.1e-94 348.2 290 64.1
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.7e-92 341.7 318 61.6
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 7.4e-92 341.3 306 62.7
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-91 339.7 304 62.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-91 339.7 306 62.4
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 2.2e-91 339.7 255 69.4
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 6.3e-91 338.2 306 59.8
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.2e-91 337.8 289 61.9
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-90 337.4 309 62.1
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-90 335.9 261 67.8
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 4.1e-90 335.5 278 66.9
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 6.9e-90 334.7 261 67.8
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 6.9e-90 334.7 261 67.8
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 9.1e-90 334.3 255 68.2
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.0e-89 333.2 276 64.5
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 4.5e-89 332.0 301 62.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 5.0e-88 328.6 276 64.1
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 8.5e-88 327.8 277 62.8
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-87 327.4 276 64.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-87 327.4 301 61.1
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.9e-87 326.6 285 58.6
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.9e-87 326.6 262 63.4
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.5e-87 326.2 262 63.4
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.5e-87 326.2 262 63.4
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-87 325.9 301 61.1
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.2e-87 325.5 262 63.4
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 4.2e-87 325.5 276 64.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 7.2e-87 324.7 262 62.6
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 9.4e-87 324.3 262 63.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.6e-86 323.6 278 60.8
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.1e-86 323.2 267 62.2
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.1e-86 323.2 257 63.8
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.1e-86 323.2 283 59.7
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.7e-86 322.8 267 62.2
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.7e-86 322.8 278 59.7
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.6e-86 322.4 257 63.4
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.6e-86 322.4 257 63.4
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 3.6e-86 322.4 257 63.4
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.7e-86 322.0 271 62.0
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-85 320.5 180 87.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.3e-85 319.7 257 62.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 5.2e-85 318.5 275 61.5
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 5.2e-85 318.5 276 59.4
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.2e-85 318.5 282 58.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.8e-85 317.8 260 62.7
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 8.8e-85 317.8 269 60.6
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.1e-84 317.4 257 63.4
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.1e-84 317.4 271 61.6
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.5e-84 317.0 265 60.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.0e-84 316.6 262 66.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 2.0e-84 316.6 264 61.4
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 2.6e-84 316.2 248 64.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.6e-84 316.2 257 62.6
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.6e-84 316.2 270 60.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 3.3e-84 315.8 265 61.9
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 3.3e-84 315.8 283 58.0
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 5.7e-84 315.1 271 59.8
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 7.4e-84 314.7 257 62.6
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 9.7e-84 314.3 267 58.1
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 9.7e-84 314.3 267 58.1
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-83 313.9 268 59.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-83 313.9 268 59.0
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.3e-83 313.9 267 60.7
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.7e-83 313.5 275 58.9
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.7e-83 313.5 271 59.4
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.2e-83 313.2 274 57.7
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.8e-83 312.8 257 61.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 4.8e-83 312.0 267 59.9
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 4.8e-83 312.0 259 61.0
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 6.3e-83 311.6 351 52.4
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 8.2e-83 311.2 257 61.1
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 8.2e-83 311.2 261 61.3
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 8.2e-83 311.2 274 59.1
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 8.2e-83 311.2 278 57.6
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 8.2e-83 311.2 270 61.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 8.2e-83 311.2 267 59.9
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.1e-82 308.9 269 57.6
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 4.1e-82 308.9 257 61.1
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 5.3e-82 308.5 271 58.7
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.0e-82 308.1 247 60.7
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.6e-81 307.0 248 62.9
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.0e-81 306.6 267 59.6
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.0e-81 306.6 273 57.1
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.6e-81 306.2 275 58.2
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.5e-81 305.4 296 54.7
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 4.5e-81 305.4 298 54.0
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.7e-81 304.7 256 59.8
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 7.7e-81 304.7 270 55.6
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.7e-80 303.5 241 61.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 2.2e-80 303.1 265 58.1
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.9e-80 302.8 268 56.7
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.9e-80 302.8 257 59.1
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 3.8e-80 302.4 298 54.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.5e-80 301.2 257 59.1
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 8.5e-80 301.2 269 56.9
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.1e-79 300.8 257 58.4
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 5.5e-79 298.5 237 59.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.6e-78 297.0 268 59.0
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.1e-78 296.6 263 54.0
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 3.6e-78 295.8 303 54.1
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 5.2e-77 292.0 263 55.9
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 6.7e-77 291.6 263 55.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 8.8e-77 291.2 299 57.5
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 8.8e-77 291.2 258 54.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.5e-76 290.4 257 59.5
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 3.3e-76 289.3 255 56.5
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 4.4e-76 288.9 247 60.3
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.3e-75 287.3 260 56.2
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.7e-75 287.0 268 54.5
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.2e-75 286.6 254 59.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 2.8e-75 286.2 269 55.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.1e-74 284.3 203 67.0
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.4e-74 283.1 238 56.7
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.4e-74 283.1 252 56.3
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.1e-74 282.7 226 61.9
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-72 277.3 220 60.0
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.5e-71 273.1 264 54.9
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.0e-69 267.7 227 60.4
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.4e-69 267.3 236 53.0
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.8e-69 266.9 268 47.4
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 4.0e-69 265.8 279 52.3
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.5e-68 263.8 267 50.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 9.8e-68 261.2 253 51.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.7e-67 260.4 241 58.9
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.8e-67 259.6 258 56.2
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.8e-67 258.8 192 64.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.8e-67 258.8 237 51.1
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.8e-66 256.9 270 53.7
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 9.5e-63 244.6 238 49.6
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.2e-60 237.7 305 46.9
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 7.5e-60 235.0 294 47.3
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.4e-58 230.7 236 51.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.5e-55 220.7 212 53.8
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.3e-48 197.6 133 67.7
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 6.2e-46 188.7 92 98.9
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 6.2e-46 188.7 138 58.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 5.2e-45 185.7 233 42.1
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 2.6e-44 183.3 138 58.0
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 7.5e-44 181.8 245 42.0
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 9.8e-44 181.4 155 62.6
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 2.2e-43 180.3 301 42.2
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 2.2e-43 180.3 214 47.2
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-42 177.6 141 66.0
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-42 177.2 310 42.3
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.1e-42 176.0 152 57.2
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 5.4e-42 175.6 200 45.0
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.0e-42 175.3 156 56.4
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 9.2e-42 174.9 169 49.1
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.2e-38 164.5 285 39.6
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.4e-37 161.0 248 38.3
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.8e-37 160.6 264 38.6
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.4e-36 156.4 227 41.4
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-30 137.1 152 52.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.8e-30 136.7 130 57.7
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 8.1e-30 135.2 146 52.1
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 1.5e-28 131.0 117 61.5
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-26 124.8 85 74.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.9e-23 114.0 77 61.0
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 7.3e-23 112.1 123 52.0
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.8e-20 102.4 104 49.0
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.3e-14 84.7 101 48.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-11 74.7 52 73.1
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-11 74.7 52 73.1
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-11 73.6 52 71.2
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.4e-11 72.0 52 69.2
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 9.3e-10 68.6 81 45.7


User provided reference genes

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