Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.9e-186 656.0 403 100.0
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.4e-181 639.0 428 93.7
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 5.9e-172 607.8 415 88.0
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 3.4e-167 592.0 404 87.4
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 6.3e-166 587.8 404 87.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.2e-118 429.9 443 63.0
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 2.1e-113 413.3 481 57.6
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.5e-111 407.1 424 56.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 3.8e-102 375.9 473 53.5
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 9.6e-98 361.3 409 55.5
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 4.8e-89 332.4 452 54.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.9e-75 286.2 447 44.5
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 5.0e-70 269.2 425 49.4
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.5e-58 231.1 414 40.1
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 4.4e-58 229.6 414 40.1
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 4.4e-58 229.6 413 41.9
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.2e-54 217.2 427 36.8
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.1e-52 210.7 429 36.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 3.6e-52 209.9 407 43.2
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.8e-51 207.6 409 37.2
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.8e-51 207.6 409 40.1
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.8e-51 207.6 415 41.0
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 3.0e-51 206.8 437 37.3
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 3.0e-51 206.8 422 39.1
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 6.8e-51 205.7 407 36.6
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.2e-50 204.9 417 37.4
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.6e-50 203.8 421 35.2
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.6e-50 203.8 430 35.1
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 5.7e-50 202.6 428 38.1
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.7e-49 201.1 437 35.5
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 2.2e-49 200.7 428 35.5
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.8e-49 199.5 420 40.5
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 6.3e-49 199.1 421 38.0
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 1.8e-48 197.6 435 41.8
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 3.1e-48 196.8 418 34.2
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 4.1e-48 196.4 450 36.2
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 5.4e-48 196.1 435 41.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 5.4e-48 196.1 415 35.9
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 5.4e-48 196.1 422 32.7
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 5.4e-48 196.1 432 37.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 7.0e-48 195.7 419 37.2
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 2.7e-47 193.7 470 37.4
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 2.7e-47 193.7 232 46.6
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 3.5e-47 193.4 432 35.4
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 4.5e-47 193.0 438 36.5
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 7.7e-47 192.2 425 40.5
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.0e-46 191.8 425 40.7
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.1e-45 188.3 424 33.3
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 2.5e-45 187.2 442 35.7
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 3.3e-45 186.8 441 44.4
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 5.5e-45 186.0 228 50.0
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 9.5e-45 185.3 411 32.6
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 9.5e-45 185.3 484 33.3
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.1e-44 184.1 415 34.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.1e-44 184.1 412 34.0
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.8e-44 183.7 423 37.6
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 6.1e-44 182.6 432 38.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 1.4e-43 181.4 403 38.7
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.4e-43 181.4 424 34.4
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 5.2e-43 179.5 230 43.5
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 5.2e-43 179.5 440 33.6
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 8.9e-43 178.7 437 37.8
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.2e-42 178.3 453 33.6
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 4.4e-42 176.4 436 45.2
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 9.8e-42 175.3 446 33.6
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 9.8e-42 175.3 215 45.6
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 2.2e-41 174.1 239 42.3
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.2e-41 174.1 414 34.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.2e-41 174.1 421 36.6
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 3.1e-40 170.2 407 40.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 5.4e-40 169.5 452 38.7
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 2.7e-39 167.2 419 33.2
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 5.9e-39 166.0 427 44.7
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.7e-38 164.5 195 47.2
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 1.7e-38 164.5 386 33.9
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 2.3e-38 164.1 220 42.3
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 6.6e-38 162.5 192 45.3
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 1.1e-37 161.8 427 33.0
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 3.3e-37 160.2 228 45.2
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 5.6e-37 159.5 468 31.4
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 7.3e-37 159.1 338 39.6
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 6.1e-36 156.0 430 34.2
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.0e-34 151.0 447 37.6
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 7.5e-34 149.1 503 29.0
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 9.8e-34 148.7 413 36.1
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 9.8e-34 148.7 431 32.5
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.2e-33 147.5 143 53.8
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 2.9e-33 147.1 420 31.0
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 7.3e-29 132.5 350 40.3
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 2.1e-28 131.0 444 32.7
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 3.7e-25 120.2 409 35.7
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.3e-25 119.0 413 29.5
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.9e-24 117.9 89 57.3
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 9.2e-24 115.5 424 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 7.3e-21 105.9 95 49.5
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 8.9e-19 99.0 273 30.4
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.4e-16 90.9 200 36.0
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 7.1e-16 89.4 409 31.8
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.8e-11 74.7 299 33.1
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-07 61.6 62 45.2
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-07 61.6 62 45.2
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 3.9e-06 57.0 33 72.7
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 5.1e-06 56.6 88 38.6


User provided reference genes

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