Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45419 Brassica carinata HOM05D001880 ORTHO05D020102 1.9e-75 285.8 147 100.0
BcaB06g28489 Brassica carinata HOM05D001880 ORTHO05D020102 3.4e-69 265.0 180 80.6
C06p30510 Brassica napus HOM05D001880 ORTHO05D020102 1.1e-59 233.4 211 64.9
C04p60340 Brassica napus HOM05D001880 ORTHO05D020102 8.9e-17 90.9 45 97.8
BolC4t27535H Brassica oleracea HOM05D001880 ORTHO05D020102 8.9e-17 90.9 45 97.8
BolC6t35463H Brassica oleracea HOM05D001880 ORTHO05D020102 8.9e-17 90.9 45 97.8
BolC6t38214H Brassica oleracea HOM05D001880 ORTHO05D020102 8.9e-17 90.9 45 97.8
C03p85230 Brassica napus HOM05D001880 ORTHO05D004730 4.4e-16 88.6 45 95.6
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
BraA01t03248Z Brassica rapa HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 3.1e-14 82.4 45 88.9
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 1.2e-13 80.5 53 75.5
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 1.6e-13 80.1 74 59.5
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 2.0e-13 79.7 45 84.4
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 2.7e-13 79.3 45 82.2
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 5.9e-13 78.2 53 73.6
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 1.0e-12 77.4 74 58.1
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 1.0e-12 77.4 145 39.3
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 1.3e-12 77.0 45 80.0
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 1.3e-12 77.0 45 80.0
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 1.3e-12 77.0 45 80.0
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 2.3e-12 76.3 74 56.8
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 2.3e-12 76.3 45 77.8
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 2.3e-12 76.3 45 77.8
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 2.1e-10 69.7 74 50.0
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 3.6e-10 68.9 74 51.4
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 8.0e-10 67.8 117 38.5
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 1.0e-09 67.4 53 58.5
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 1.4e-09 67.0 72 45.8
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 1.8e-09 66.6 96 40.6
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 2.3e-09 66.2 111 39.6
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 2.3e-09 66.2 74 47.3
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 3.1e-09 65.9 53 60.4
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 3.1e-09 65.9 96 39.6
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 3.1e-09 65.9 101 40.6
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 3.1e-09 65.9 74 43.2
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 4.0e-09 65.5 53 60.4
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 4.0e-09 65.5 52 61.5
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 4.0e-09 65.5 117 36.8
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 4.0e-09 65.5 74 48.6
Atru.chr7.2155 Acer truncatum HOM05D001880 ORTHO05D004730 5.2e-09 65.1 45 64.4
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 5.2e-09 65.1 111 39.6
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 5.2e-09 65.1 53 58.5
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 5.2e-09 65.1 115 33.9
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 5.2e-09 65.1 74 47.3
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 5.2e-09 65.1 74 47.3
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 5.2e-09 65.1 117 36.8
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 5.2e-09 65.1 53 62.3
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 5.2e-09 65.1 74 48.6
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 6.8e-09 64.7 115 39.1
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 6.8e-09 64.7 45 64.4
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 6.8e-09 64.7 74 50.0
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 6.8e-09 64.7 45 64.4
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 8.9e-09 64.3 111 36.0
MD15G1097300 Malus domestica HOM05D001880 ORTHO05D004730 8.9e-09 64.3 53 58.5
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 8.9e-09 64.3 74 47.3
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 8.9e-09 64.3 53 60.4
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 1.2e-08 63.9 115 35.7
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 1.5e-08 63.5 77 46.8
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 1.5e-08 63.5 74 45.9
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 1.5e-08 63.5 74 45.9
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 2.0e-08 63.2 74 45.9
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 2.0e-08 63.2 53 58.5
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 2.0e-08 63.2 115 35.7
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 2.0e-08 63.2 115 35.7
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 2.0e-08 63.2 115 35.7
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 2.0e-08 63.2 117 38.5
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 2.6e-08 62.8 53 56.6
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.6e-08 62.8 53 56.6
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 2.6e-08 62.8 52 55.8
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 2.6e-08 62.8 52 59.6
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 2.6e-08 62.8 53 56.6
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 2.6e-08 62.8 59 54.2
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 2.6e-08 62.8 53 58.5
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.4e-08 62.4 86 38.4
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.4e-08 62.4 74 47.3
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 3.4e-08 62.4 74 43.2
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 4.4e-08 62.0 53 54.7
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 4.4e-08 62.0 53 54.7
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 4.4e-08 62.0 107 37.4
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 4.4e-08 62.0 53 58.5
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 4.4e-08 62.0 45 64.4
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 4.4e-08 62.0 74 47.3
GSVIVG01035689001 Vitis vinifera HOM05D001880 ORTHO05D004730 4.4e-08 62.0 53 58.5
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 5.8e-08 61.6 53 54.7
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 5.8e-08 61.6 74 44.6
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 5.8e-08 61.6 74 44.6
COL.COLO4_30423 Corchorus olitorius HOM05D001880 ORTHO05D004730 7.5e-08 61.2 45 60.0
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 7.5e-08 61.2 53 52.8
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 7.5e-08 61.2 74 45.9
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 9.8e-08 60.8 53 54.7
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 9.8e-08 60.8 55 52.7
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 9.8e-08 60.8 53 54.7
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 9.8e-08 60.8 59 50.8
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 1.3e-07 60.5 45 60.0
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 1.3e-07 60.5 45 60.0
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 1.3e-07 60.5 45 60.0
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 1.3e-07 60.5 74 43.2
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 1.3e-07 60.5 53 56.6
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 1.3e-07 60.5 74 44.6
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.3e-07 60.5 52 55.8
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 1.3e-07 60.5 45 62.2
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 1.3e-07 60.5 61 49.2
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 1.7e-07 60.1 74 41.9
Aa31LG4G170 Aethionema arabicum HOM05D001880 ORTHO05D004730 2.2e-07 59.7 61 49.2
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 2.2e-07 59.7 45 60.0
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 2.2e-07 59.7 45 60.0
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 2.2e-07 59.7 45 55.6
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 2.2e-07 59.7 115 37.4
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 2.2e-07 59.7 53 52.8
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 2.2e-07 59.7 74 43.2
CDE05G1114 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 2.9e-07 59.3 45 55.6
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 2.9e-07 59.3 53 52.8
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 2.9e-07 59.3 52 53.8
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 3.7e-07 58.9 91 37.4
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 3.7e-07 58.9 91 37.4
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 3.7e-07 58.9 131 33.6
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.7e-07 58.9 53 52.8
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 3.7e-07 58.9 53 52.8
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 3.7e-07 58.9 111 32.4
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 3.7e-07 58.9 139 31.7
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 4.9e-07 58.5 108 33.3
CARHR074610 Cardamine hirsuta HOM05D001880 ORTHO05D004730 4.9e-07 58.5 61 47.5
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.9e-07 58.5 53 52.8
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 4.9e-07 58.5 52 53.8
BcaNung07152 Brassica carinata HOM05D001880 ORTHO05D004730 6.4e-07 58.2 107 36.4
C06p28780 Brassica napus HOM05D001880 ORTHO05D004730 6.4e-07 58.2 107 36.4
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 6.4e-07 58.2 74 41.9
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 6.4e-07 58.2 45 60.0
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 6.4e-07 58.2 138 35.5
Pp3c21_14880 Physcomitrium patens HOM05D001880 ORTHO05D004730 6.4e-07 58.2 74 40.5
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 6.4e-07 58.2 71 42.3
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 8.3e-07 57.8 45 57.8
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 8.3e-07 57.8 45 55.6
BcaC08g45275 Brassica carinata HOM05D001880 ORTHO05D004730 1.1e-06 57.4 109 34.9
BolC6t38048H Brassica oleracea HOM05D001880 ORTHO05D004730 1.1e-06 57.4 107 36.4
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.1e-06 57.4 128 32.0
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.1e-06 57.4 128 32.0
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 1.1e-06 57.4 52 51.9
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 1.9e-06 56.6 59 47.5
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 1.9e-06 56.6 59 45.8
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 1.9e-06 56.6 53 50.9
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 1.9e-06 56.6 52 51.9
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 1.9e-06 56.6 53 52.8
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.4e-06 56.2 53 49.1
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.4e-06 56.2 53 49.1
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 3.2e-06 55.8 45 55.6
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 3.2e-06 55.8 53 49.1
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 3.2e-06 55.8 149 30.9
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 9.2e-06 54.3 53 47.2


User provided reference genes

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