Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 6.5e-34 146.7 70 100.0
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.2e-19 99.4 84 60.7
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.2e-19 99.4 84 60.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.5e-19 99.0 84 60.7
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 5.9e-19 97.1 83 60.2
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 5.9e-19 97.1 78 66.7
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 5.9e-19 97.1 78 66.7
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 5.9e-19 97.1 78 66.7
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 7.7e-19 96.7 84 59.5
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 7.7e-19 96.7 83 61.4
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 7.7e-19 96.7 84 60.7
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 7.7e-19 96.7 78 64.1
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 7.7e-19 96.7 83 61.4
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 1.0e-18 96.3 87 57.5
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 1.0e-18 96.3 87 57.5
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 1.0e-18 96.3 87 57.5
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 1.0e-18 96.3 87 57.5
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 62.7
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 60.2
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 60.2
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.3e-18 95.9 84 59.5
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 60.2
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.3e-18 95.9 78 64.1
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 1.3e-18 95.9 84 59.5
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-18 95.9 78 64.1
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-18 95.9 78 64.1
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-18 95.9 78 64.1
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-18 95.9 78 64.1
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 60.2
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 1.3e-18 95.9 83 60.2
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.7e-18 95.5 78 62.8
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.7e-18 95.5 84 59.5
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.7e-18 95.5 83 59.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 1.7e-18 95.5 78 65.4
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.2e-18 95.1 84 59.5
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 2.2e-18 95.1 86 58.1
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 2.2e-18 95.1 78 62.8
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.9e-18 94.7 84 58.3
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.9e-18 94.7 78 62.8
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 2.9e-18 94.7 87 56.3
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.9e-18 94.7 87 56.3
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.9e-18 94.7 87 56.3
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 2.9e-18 94.7 87 56.3
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 2.9e-18 94.7 78 62.8
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 2.9e-18 94.7 84 58.3
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.9e-18 94.7 83 59.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.9e-18 94.7 84 57.1
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.9e-18 94.7 87 56.3
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 3.8e-18 94.4 87 56.3
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 3.8e-18 94.4 87 56.3
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 58.3
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 58.3
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 3.8e-18 94.4 83 59.0
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 3.8e-18 94.4 87 56.3
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 58.3
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 58.3
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 58.3
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 3.8e-18 94.4 83 59.0
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 59.5
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.8e-18 94.4 84 59.5
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 3.8e-18 94.4 87 56.3
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 3.8e-18 94.4 78 62.8
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.0e-18 94.0 78 61.5
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 5.0e-18 94.0 87 56.3
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 5.0e-18 94.0 87 56.3
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 5.0e-18 94.0 87 56.3
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 5.0e-18 94.0 87 56.3
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 5.0e-18 94.0 87 56.3
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 5.0e-18 94.0 83 59.0
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 5.0e-18 94.0 83 59.0
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 5.0e-18 94.0 88 54.5
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 6.5e-18 93.6 83 59.0
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 6.5e-18 93.6 78 61.5
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.5e-18 93.6 78 61.5
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 58.3
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 57.1
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 8.5e-18 93.2 83 57.8
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 8.5e-18 93.2 83 57.8
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 8.5e-18 93.2 83 57.8
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 8.5e-18 93.2 87 55.2
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 56.0
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 8.5e-18 93.2 78 61.5
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 8.5e-18 93.2 78 61.5
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 8.5e-18 93.2 78 61.5
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 60.7
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 8.5e-18 93.2 78 61.5
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 8.5e-18 93.2 83 57.8
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 56.0
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 8.5e-18 93.2 84 56.0
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.1e-17 92.8 84 54.8
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 61.5
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 61.5
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 61.5
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 64.1
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 61.5
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 1.1e-17 92.8 78 61.5
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.4e-17 92.4 78 61.5
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.4e-17 92.4 78 61.5
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.4e-17 92.4 78 61.5
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.4e-17 92.4 78 61.5
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.4e-17 92.4 78 60.3
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.9e-17 92.0 78 62.8
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 1.9e-17 92.0 84 56.0
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.9e-17 92.0 83 57.8
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 2.5e-17 91.7 84 56.0
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 3.2e-17 91.3 84 56.0
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 3.2e-17 91.3 77 61.0
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.2e-17 90.9 78 60.3
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 7.2e-17 90.1 84 56.0
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 7.2e-17 90.1 77 61.0
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 7.2e-17 90.1 77 61.0
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 9.4e-17 89.7 79 59.5
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 1.6e-16 89.0 78 60.3
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.1e-16 88.6 77 61.0
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 6.1e-16 87.0 68 66.2
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 6.1e-16 87.0 84 53.6
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 3.0e-15 84.7 78 53.8
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.9e-15 84.3 88 54.5
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 8.8e-15 83.2 93 52.7
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.6e-14 81.6 78 53.8
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 9.7e-14 79.7 78 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.3e-13 79.3 84 47.6
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.7e-13 79.0 84 46.4
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 3.7e-13 77.8 104 45.2
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 3.1e-12 74.7 84 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.3e-12 73.9 84 44.0
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 5.3e-12 73.9 84 45.2
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 5.3e-12 73.9 83 48.2
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 7.0e-12 73.6 65 58.5
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.2e-11 72.8 71 53.5
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 2.9e-10 68.2 142 35.9
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 3.8e-10 67.8 60 61.7
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 3.8e-10 67.8 60 61.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 8.5e-10 66.6 84 39.3
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 8.5e-10 66.6 77 48.1
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 7.2e-09 63.5 34 79.4
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 6.1e-08 60.5 66 51.5
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 6.1e-08 60.5 75 44.0
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.5e-06 55.8 69 47.8
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 4.4e-06 54.3 60 53.3
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 4.4e-06 54.3 60 53.3
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 5.7e-06 53.9 60 53.3
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 7.5e-06 53.5 60 53.3


User provided reference genes

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