Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 1.3e-219 766.1 390 100.0
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 9.4e-199 696.8 409 89.7
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 9.4e-199 696.8 409 89.7
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.4e-156 555.4 441 69.2
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.2e-153 547.0 444 67.8
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 4.6e-153 545.0 444 67.8
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 5.9e-153 544.7 444 67.6
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 7.8e-153 544.3 445 67.4
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 7.8e-153 544.3 445 67.4
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 7.8e-153 544.3 445 67.4
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.1e-150 534.6 445 68.1
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 3.1e-149 532.3 443 66.1
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 6.8e-149 531.2 443 65.5
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 1.3e-147 526.9 443 65.5
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 1.4e-146 523.5 444 64.6
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.6e-145 520.0 443 65.2
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.6e-142 510.0 443 64.1
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 1.2e-129 467.2 421 58.4
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 1.6e-129 466.8 444 56.8
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 1.7e-128 463.4 445 56.2
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 1.7e-128 463.4 445 56.2
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 1.7e-128 463.4 445 56.2
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 3.0e-128 462.6 444 56.8
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 3.0e-128 462.6 442 58.4
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 1.5e-127 460.3 444 56.1
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.9e-127 459.9 443 55.3
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 7.3e-127 458.0 442 55.9
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 3.6e-126 455.7 441 54.9
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 8.1e-126 454.5 441 55.3
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 8.1e-126 454.5 443 54.6
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 1.1e-125 454.1 444 55.4
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 2.4e-125 453.0 428 56.3
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 3.1e-125 452.6 443 54.4
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 6.8e-125 451.4 444 55.4
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 2.0e-124 449.9 425 56.9
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 2.0e-124 449.9 427 55.5
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 4.4e-124 448.7 434 54.8
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 5.8e-124 448.4 443 55.3
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 7.6e-124 448.0 425 56.5
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 9.9e-124 447.6 425 56.0
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 9.9e-124 447.6 426 56.6
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 1.3e-123 447.2 423 55.8
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 1.7e-123 446.8 442 54.8
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 1.7e-123 446.8 425 56.7
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 2.2e-123 446.4 421 56.8
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 2.9e-123 446.0 428 54.9
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 3.8e-123 445.7 448 53.1
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 4.9e-123 445.3 443 53.3
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 6.4e-123 444.9 421 55.1
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 8.4e-123 444.5 442 54.1
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 1.1e-122 444.1 466 52.4
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 1.1e-122 444.1 443 53.5
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.1e-122 444.1 426 55.9
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 1.1e-122 444.1 442 54.1
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.9e-122 443.4 421 57.5
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 1.9e-122 443.4 422 55.0
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 1.9e-122 443.4 428 54.2
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 2.4e-122 443.0 446 54.5
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 2.4e-122 443.0 446 54.5
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 3.2e-122 442.6 441 54.4
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 3.2e-122 442.6 443 54.0
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 4.2e-122 442.2 426 55.6
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 7.1e-122 441.4 421 57.5
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 7.1e-122 441.4 444 54.1
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 9.3e-122 441.0 441 53.5
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 1.2e-121 440.7 430 54.4
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 1.2e-121 440.7 418 57.2
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 1.6e-121 440.3 427 54.1
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 2.1e-121 439.9 421 56.1
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 3.5e-121 439.1 421 57.2
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 3.5e-121 439.1 441 53.5
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 3.5e-121 439.1 443 52.8
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 7.8e-121 438.0 442 54.8
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.3e-120 437.2 442 53.4
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 3.0e-120 436.0 479 50.5
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 3.9e-120 435.6 441 53.3
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 5.1e-120 435.3 434 54.4
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 5.1e-120 435.3 434 55.5
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 1.1e-119 434.1 443 53.0
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 1.1e-119 434.1 425 54.8
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.5e-119 433.7 444 53.6
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 2.5e-119 433.0 441 52.6
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 3.3e-119 432.6 441 52.8
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 5.6e-119 431.8 441 52.8
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 9.6e-119 431.0 441 52.4
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 2.1e-118 429.9 441 52.4
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 2.1e-118 429.9 429 55.0
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 4.8e-118 428.7 441 51.0
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 1.8e-117 426.8 434 54.6
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 5.3e-117 425.2 425 54.1
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.9e-117 424.9 460 52.4
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 4.9e-115 418.7 323 70.6
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 8.4e-115 417.9 411 54.3
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.4e-114 417.2 416 53.4
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 2.4e-114 416.4 420 54.3
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 3.5e-113 412.5 438 50.5
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 3.5e-113 412.5 460 51.7
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 3.0e-112 409.5 357 59.1
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 1.1e-111 407.5 420 52.6
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 3.3e-111 406.0 423 50.6
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 5.6e-111 405.2 421 53.0
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 2.4e-109 399.8 401 53.9
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 6.9e-109 398.3 423 50.4
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 4.5e-108 395.6 421 51.5
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 9.9e-108 394.4 428 49.1
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 1.4e-106 390.6 402 54.5
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 3.2e-106 389.4 423 49.4
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 1.2e-105 387.5 361 54.3
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 1.2e-105 387.5 437 50.1
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 2.1e-105 386.7 433 48.5
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 1.8e-101 373.6 436 47.2
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 3.1e-101 372.9 435 45.7
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 1.9e-98 363.6 348 52.6
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 5.5e-98 362.1 616 37.7
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 4.3e-95 352.4 322 56.8
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 5.7e-95 352.1 322 57.1
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 9.3e-90 334.7 425 43.5
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 4.6e-89 332.4 445 40.7
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.2e-84 317.8 407 45.9
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.4e-82 310.8 422 43.1
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 4.2e-82 309.3 446 42.6
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 5.5e-82 308.9 446 42.8
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 2.7e-81 306.6 423 43.7
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 1.4e-80 304.3 446 42.4
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 1.8e-77 293.9 462 40.9
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 4.7e-73 279.3 427 40.5
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 6.1e-73 278.9 368 40.8
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 1.8e-72 277.3 414 42.3
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 4.4e-71 272.7 403 42.4
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 2.4e-69 266.9 425 39.5
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 3.5e-68 263.1 415 39.3
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.9e-67 260.0 288 50.0
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 1.1e-66 258.1 372 39.5
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 1.0e-64 251.5 278 50.4
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 2.0e-63 247.3 402 38.3
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 1.7e-62 244.2 229 55.9
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 7.0e-61 238.8 359 37.3
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.2e-59 233.8 396 38.6
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 1.8e-56 224.2 194 60.8
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.5e-50 204.5 398 36.9
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 9.8e-47 191.8 356 37.4
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 7.0e-45 185.7 214 51.4
AUR62010753 Chenopodium quinoa HOM05D004526 ORTHO05D005548 6.6e-43 179.1 215 46.5
arahy.Tifrunner.gnm1.ann1.NNND2U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.8e-40 171.0 192 51.0
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 3.7e-38 163.3 234 40.6
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.4e-38 162.5 222 46.4
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 1.2e-33 148.3 231 39.8
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 5.6e-26 122.9 194 43.8
CAN.G742.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.1e-18 98.6 127 44.9
Cpa.g.c42185 Carica papaya HOM05D004526 ORTHO05D005548 1.9e-18 97.8 61 72.1
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 2.3e-16 90.9 65 56.9
Sp7g07820 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.7e-14 84.7 113 38.9
Sp5g20800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.1e-13 82.0 112 41.1
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 7.8e-12 75.9 121 42.1
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 2.5e-10 70.9 105 43.8
SHI08814 Sapria himalayana HOM05D004526 ORTHO05D005548 4.9e-06 56.6 41 51.2


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