Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 7.1e-207 723.8 389 100.0
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 3.4e-193 678.3 417 89.2
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.9e-183 646.0 416 86.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.6e-182 642.9 416 85.8
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.5e-164 583.2 422 77.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 9.4e-159 563.9 429 74.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 9.5e-151 537.3 362 81.5
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.1e-150 536.2 427 74.7
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 4.7e-150 535.0 427 74.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 6.1e-150 534.6 419 73.5
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 8.0e-150 534.3 427 73.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.8e-149 533.1 419 73.7
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.2e-145 520.4 364 80.2
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.2e-145 520.4 414 71.7
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.3e-143 512.3 405 72.3
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 4.3e-143 511.9 428 71.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.8e-141 506.5 322 83.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.8e-141 504.6 407 67.3
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.7e-139 500.0 409 66.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.9e-139 499.2 396 69.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 4.9e-139 498.4 419 66.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.4e-138 496.1 393 69.5
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 3.2e-138 495.7 395 69.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 4.1e-138 495.4 417 67.1
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.6e-137 493.4 394 69.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-137 493.4 418 67.9
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.7e-137 492.7 419 66.1
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 4.6e-137 491.9 402 69.2
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.0e-136 490.7 423 66.7
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.0e-136 489.2 395 70.1
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.0e-136 488.4 414 66.7
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.6e-136 487.6 417 66.2
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.9e-135 486.5 396 69.2
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.5e-135 486.1 393 70.0
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 2.5e-135 486.1 417 64.7
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 3.3e-135 485.7 417 67.1
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 3.3e-135 485.7 393 68.7
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.3e-135 485.3 417 65.9
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.6e-135 485.0 419 66.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.6e-135 485.0 417 65.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.6e-134 483.4 419 64.4
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.6e-134 482.3 407 70.8
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 4.7e-134 481.9 394 69.8
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.3e-133 479.6 411 64.5
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 4.0e-133 478.8 416 65.6
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.0e-132 476.5 417 65.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.6e-132 476.1 432 62.0
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.6e-132 476.1 398 69.3
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 2.6e-132 476.1 411 67.9
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.4e-132 475.3 417 64.5
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 5.8e-132 474.9 432 61.8
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 7.5e-132 474.6 416 66.6
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 9.8e-132 474.2 432 61.8
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 9.8e-132 474.2 414 65.9
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 9.8e-132 474.2 419 65.9
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 4.9e-131 471.9 397 67.0
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 6.4e-131 471.5 396 67.9
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.1e-130 470.7 400 66.5
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.9e-130 469.9 395 68.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.4e-130 469.5 412 63.8
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 3.2e-130 469.2 394 64.5
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 9.2e-130 467.6 432 61.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.6e-129 466.8 425 64.2
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 4.6e-129 465.3 399 66.2
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.6e-129 465.3 364 70.6
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.0e-128 464.2 423 64.1
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.0e-128 464.2 398 66.8
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.7e-128 463.4 396 65.4
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.3e-128 463.0 398 68.1
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.0e-128 462.6 404 65.1
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 5.1e-128 461.8 416 63.7
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 5.1e-128 461.8 404 64.4
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 6.6e-128 461.5 415 64.8
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.1e-127 460.7 411 63.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.9e-127 459.9 417 65.2
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.6e-127 458.4 411 63.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 8.1e-126 454.5 365 68.5
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 8.1e-126 454.5 398 65.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.0e-125 452.2 430 60.9
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.0e-125 452.2 406 63.3
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 5.4e-122 441.8 396 62.4
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.6e-121 440.3 415 61.9
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.5e-121 439.1 397 61.2
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 5.1e-120 435.3 384 63.8
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.3e-119 432.6 388 62.4
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 4.7e-118 428.7 399 64.4
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.4e-117 426.4 415 61.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 8.9e-117 424.5 401 58.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.2e-116 424.1 415 61.7
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 3.8e-115 419.1 398 62.3
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 8.4e-115 417.9 408 58.3
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.4e-114 417.2 436 56.0
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 4.2e-114 415.6 420 55.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 4.2e-114 415.6 393 59.5
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.6e-113 413.7 431 55.2
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.1e-113 413.3 433 59.1
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.5e-113 412.5 415 60.2
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 7.8e-113 411.4 408 57.6
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.0e-112 411.0 420 59.3
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.9e-112 409.1 424 59.2
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 6.6e-112 408.3 405 58.3
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.5e-111 407.1 393 59.0
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 3.3e-111 406.0 392 58.7
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 7.3e-103 378.3 391 56.0
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.9e-101 371.7 398 56.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.3e-96 356.7 393 53.9
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.1e-94 350.1 258 74.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.0e-93 345.9 380 54.5
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 4.9e-91 339.0 429 50.6
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.8e-88 330.5 275 66.9
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 5.1e-88 328.9 233 74.2
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 6.2e-86 322.0 441 46.3
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.2e-82 309.7 287 61.0
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.2e-73 281.2 340 51.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 6.1e-73 278.9 326 53.4
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 7.7e-68 261.9 280 59.3
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 4.7e-65 252.7 159 81.1
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.4e-64 251.1 160 79.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.3e-64 250.4 226 61.9
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.1e-63 248.1 279 53.4
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.2e-56 222.6 158 72.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-54 218.0 118 90.7
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 7.0e-53 212.2 115 89.6
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.0e-52 210.7 153 80.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.0e-48 198.4 168 60.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 5.9e-44 182.6 112 83.0
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 3.2e-42 176.8 117 76.9
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 4.4e-39 166.4 159 55.3
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.7e-39 166.0 265 44.5
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.8e-38 163.7 231 48.1
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 3.7e-38 163.3 156 50.0
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.5e-36 156.8 414 32.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.2e-34 149.1 116 67.2
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 7.3e-26 122.5 165 47.9
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 6.8e-24 115.9 97 62.9
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.3e-19 100.9 60 78.3
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.3e-19 100.9 157 42.7
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 5.0e-19 99.8 72 66.7
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.6e-19 99.4 60 76.7
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.6e-19 99.4 60 76.7
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.5e-18 98.2 142 45.8
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.3e-18 97.1 60 75.0
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 4.7e-17 93.2 68 66.2
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.1e-16 92.0 68 64.7
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.8e-16 91.3 66 65.2
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 6.8e-16 89.4 46 93.5
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 6.8e-16 89.4 46 93.5
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.4e-13 80.9 107 45.8
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 7.3e-10 69.3 35 94.3
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 6.8e-08 62.8 90 44.4


User provided reference genes

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