Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2566.2 1277 100.0
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2555.0 1277 99.5
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 2548.5 1283 99.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2509.2 1279 97.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 2497.6 1285 97.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2466.0 1282 96.1
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 2345.5 1279 91.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 2340.8 1273 91.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 2335.1 1274 91.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 2333.5 1278 90.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 2318.5 1272 90.6
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 2280.0 1274 89.6
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 2010.0 1277 78.0
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1983.8 1277 77.8
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1800.4 1280 69.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1786.2 1288 69.0
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1770.0 1283 69.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1288 68.2
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1755.0 1288 68.2
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1750.3 1288 68.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1741.5 1285 67.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1735.7 1284 66.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1723.4 1279 67.3
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1720.7 1288 67.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1717.6 1284 66.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1716.0 1275 66.1
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1715.7 1274 66.6
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1714.5 1282 67.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1707.6 1274 66.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1283 66.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1279 66.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1697.9 1284 66.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1695.6 1279 66.9
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1694.9 1276 65.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1692.9 1283 66.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1284 66.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1285 66.1
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1677.1 1289 65.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1674.1 1276 65.2
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1673.3 1284 65.4
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1670.6 1280 64.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1280 64.9
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1662.5 1279 65.1
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1662.5 1279 64.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1661.4 1280 65.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1661.0 1279 64.6
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1658.7 1289 65.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1657.9 1289 65.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1657.1 1289 65.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1655.2 1279 64.1
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1652.9 1279 64.2
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1651.0 1315 64.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1645.2 1279 64.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1644.8 1279 64.1
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1644.4 1281 64.4
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1644.4 1279 64.0
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1643.2 1279 64.0
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1642.9 1279 64.3
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1636.7 1285 63.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1632.8 1244 66.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1628.6 1290 63.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1279 63.9
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1247 64.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1621.7 1276 63.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1617.4 1279 62.2
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1615.5 1279 63.3
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1606.7 1291 62.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1604.7 1285 62.7
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1603.2 1381 59.2
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1602.4 1286 62.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1596.6 1284 61.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1593.2 1283 62.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1577.4 1358 58.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1576.6 1280 60.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1573.5 1279 62.9
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1561.2 1278 62.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1542.3 1376 58.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1534.2 1280 59.9
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1530.4 1280 59.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1519.6 1286 60.9
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1515.0 1214 62.6
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1510.4 1279 59.1
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1508.8 1182 63.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1481.8 1272 59.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1481.8 1191 63.5
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1453.0 1294 57.6
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1430.6 1267 56.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1394.8 1043 65.9
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1392.1 1045 66.2
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1369.4 1040 67.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1347.4 1048 64.1
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1334.3 1278 53.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1318.9 1273 55.6
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1316.2 1278 53.2
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1276.9 1182 55.7
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1230.7 1283 53.4
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1176.0 1229 51.1
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1111.7 834 67.6
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1111.3 1326 46.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1105.1 946 60.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1090.5 818 68.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1088.9 1298 46.2
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1084.3 880 61.2
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1078.9 1323 45.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-310 1070.1 834 63.5
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.4e-304 1050.0 1336 44.8
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 3.2e-304 1048.9 1199 47.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.1e-296 1023.8 765 65.6
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.6e-295 1018.5 949 58.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 6.2e-292 1008.1 1150 49.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.4e-283 979.5 836 59.7
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.3e-283 978.4 949 56.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 8.4e-281 971.1 769 63.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.2e-279 967.2 780 61.3
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.0e-253 880.2 694 65.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.4e-222 777.7 1504 35.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.3e-212 744.6 627 60.1
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.5e-192 677.9 608 55.1
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.0e-189 667.5 555 62.2
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.1e-185 652.9 504 67.3
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.9e-180 637.1 471 67.1
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.2e-171 607.1 503 59.0
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.4e-128 463.8 328 69.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.5e-125 454.1 365 63.3
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 3.6e-122 444.1 403 58.1
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.7e-111 408.7 335 61.2
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.3e-100 371.7 1390 27.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.1e-85 322.0 1238 26.6
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.6e-77 295.8 262 56.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.5e-45 188.3 238 46.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 9.6e-43 180.3 153 62.1
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.7e-42 178.3 157 56.1
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 5.7e-27 127.9 112 59.8
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 4.5e-24 118.2 76 71.1
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 7.7e-16 90.9 53 84.9
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.7e-15 89.7 53 83.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.2e-13 83.6 50 82.0
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 4.7e-13 81.6 48 83.3
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 8.0e-13 80.9 48 83.3
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.4e-12 80.1 67 56.7
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.4e-11 75.1 46 73.9
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.4e-11 75.1 102 40.2
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.7e-10 73.2 44 77.3
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 4.8e-10 71.6 209 28.2
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 6.3e-10 71.2 48 66.7
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 8.2e-10 70.9 50 68.0
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.4e-09 70.1 117 38.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.5e-08 65.5 179 32.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-07 63.5 141 31.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.2e-07 62.8 41 75.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.8e-07 62.0 80 43.8
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 3.2e-06 58.9 132 26.5
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 4.2e-06 58.5 87 36.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 7.2e-06 57.8 181 29.8


User provided reference genes

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