Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1875.1 935 100.0
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1875.1 935 100.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1868.6 935 99.6
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1862.4 935 99.3
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1860.9 935 99.3
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1820.8 935 97.2
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1812.3 935 95.6
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1812.3 935 95.6
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1791.5 934 94.6
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1753.8 934 92.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1746.5 934 92.2
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1741.5 934 91.9
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1726.5 934 91.2
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1699.9 947 88.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1625.5 941 86.3
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 944 81.5
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 945 81.9
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 943 80.8
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 943 80.7
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 943 80.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 944 80.7
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 942 80.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 943 80.6
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 944 80.4
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 944 80.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 942 80.9
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 945 79.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1534.2 943 79.9
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 947 79.8
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 945 79.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 942 79.3
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 947 80.0
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 942 79.9
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 945 80.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 939 79.4
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 943 79.2
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 944 79.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 943 79.5
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 944 79.4
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 943 79.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 943 79.4
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 944 79.0
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 943 78.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 944 79.1
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1510.0 943 78.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 941 79.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 943 79.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 942 79.2
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 942 79.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 943 78.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 947 78.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 944 78.5
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 957 78.1
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 943 78.7
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 939 79.1
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 943 78.0
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 944 77.5
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 944 77.3
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 940 76.6
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 940 77.7
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 941 76.8
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 940 76.7
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 945 77.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 940 76.7
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 953 76.5
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 942 76.4
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 948 77.0
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 935 76.8
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 951 76.3
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1474.5 951 76.9
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1474.5 943 77.6
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 939 77.4
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 942 76.2
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 938 76.5
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 945 77.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 954 76.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 943 76.7
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 947 76.8
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 943 77.3
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 941 76.5
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 950 76.2
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 943 76.8
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 950 76.1
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 951 76.4
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 953 76.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 950 75.9
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 942 77.1
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 952 75.9
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1449.5 948 76.2
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1445.6 940 76.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1445.3 980 73.7
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1444.9 945 75.6
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1442.2 940 76.2
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1440.6 940 76.1
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1432.5 953 74.7
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1432.2 940 76.1
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1430.6 951 75.6
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1421.0 944 75.2
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1419.4 939 75.9
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1389.8 941 72.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1377.1 940 73.0
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1371.7 832 80.9
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1369.8 958 68.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1369.0 943 69.1
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1329.7 939 70.1
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1302.7 945 67.8
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1273.5 854 74.5
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1267.3 846 74.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1266.1 940 68.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1171.8 977 60.2
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1171.0 730 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1170.6 954 61.4
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1169.1 941 64.6
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1118.6 701 78.9
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1099.0 1005 54.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1090.5 937 59.4
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 4.9e-294 1014.6 643 77.0
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.3e-291 1006.5 641 76.6
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.2e-269 932.2 701 64.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 9.0e-224 781.2 763 52.2
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.6e-202 709.9 463 74.5
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.8e-179 634.0 444 71.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.8e-121 440.3 303 68.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.1e-111 407.9 1314 25.4
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.1e-109 402.1 631 38.8
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.4e-78 298.9 202 73.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.2e-73 281.6 207 70.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.8e-58 229.9 179 65.9
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.3e-48 197.6 300 39.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.5e-48 196.4 107 86.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.6e-42 179.1 116 74.1
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 6.8e-38 163.7 139 61.2
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.1e-33 147.5 201 40.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.9e-28 131.0 64 90.6
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 9.0e-14 83.6 80 53.8


User provided reference genes

Program Settings