Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34961 Brassica carinata HOM05D005620 ORTHO05D002193 6.9e-87 323.9 164 100.0
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 7.5e-57 224.2 117 89.7
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 7.5e-57 224.2 122 85.2
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 8.3e-56 220.7 150 72.7
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 8.3e-56 220.7 150 72.7
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 7.0e-55 217.6 163 68.7
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 9.1e-55 217.2 149 69.8
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 9.1e-55 217.2 149 69.8
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 1.6e-54 216.5 149 73.2
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 1.6e-54 216.5 149 73.2
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 1.3e-53 213.4 149 69.1
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 1.7e-53 213.0 149 68.5
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 6.5e-53 211.1 195 60.0
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 6.5e-53 211.1 122 78.7
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 1.5e-52 209.9 156 68.6
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 1.5e-52 209.9 122 77.9
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 1.4e-50 203.4 164 62.2
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 8.9e-50 200.7 122 73.0
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 6.3e-48 194.5 176 57.4
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 7.0e-47 191.0 124 71.8
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 1.6e-46 189.9 119 73.1
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 4.5e-46 188.3 148 60.8
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 5.9e-46 188.0 117 73.5
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 7.8e-46 187.6 115 72.2
Ca_25788_v3 Cicer arietinum L. HOM05D005620 ORTHO05D002193 2.3e-45 186.0 115 73.0
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 2.3e-45 186.0 117 70.9
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 2.3e-45 186.0 115 71.3
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 2.9e-45 185.7 154 61.0
CiPaw.09G042300 Carya illinoinensis HOM05D005620 ORTHO05D002193 5.0e-45 184.9 115 73.9
Nn7g36440 Nelumbo nucifera HOM05D005620 ORTHO05D002193 5.0e-45 184.9 115 72.2
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 6.6e-45 184.5 116 69.0
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 8.6e-45 184.1 115 71.3
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 1.1e-44 183.7 115 71.3
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 1.1e-44 183.7 148 60.1
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 1.5e-44 183.3 115 72.2
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 1.5e-44 183.3 145 60.0
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 1.5e-44 183.3 124 66.9
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 1.9e-44 183.0 115 72.2
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 2.5e-44 182.6 116 71.6
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 3.3e-44 182.2 117 70.1
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 3.3e-44 182.2 157 58.6
ATR0733G075 Amborella trichopoda HOM05D005620 ORTHO05D002193 5.6e-44 181.4 116 71.6
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 5.6e-44 181.4 148 58.8
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 7.3e-44 181.0 118 71.2
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 7.3e-44 181.0 115 71.3
Hma1.2p1_0056F.1_g031590 Hydrangea macrophylla HOM05D005620 ORTHO05D002193 1.6e-43 179.9 157 60.5
MSTRG.10802 Avicennia marina HOM05D005620 ORTHO05D002193 2.1e-43 179.5 115 69.6
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 2.8e-43 179.1 115 72.2
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 2.8e-43 179.1 115 69.6
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 2.8e-43 179.1 157 57.3
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 4.7e-43 178.3 117 69.2
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 6.1e-43 177.9 117 69.2
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 8.0e-43 177.6 145 60.0
BolC7t42658H Brassica oleracea HOM05D005620 ORTHO05D002193 2.3e-42 176.0 100 90.0
arahy.Tifrunner.gnm1.ann1.K8ZQW4 Arachis hypogaea HOM05D005620 ORTHO05D002193 5.2e-42 174.9 122 64.8
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 6.8e-42 174.5 115 68.7
Lj2A390T38 Lonicera japonica HOM05D005620 ORTHO05D002193 6.8e-42 174.5 131 64.9
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 6.8e-42 174.5 115 67.8
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 1.2e-41 173.7 150 56.0
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 1.2e-41 173.7 154 57.1
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 2.6e-41 172.6 117 66.7
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 3.4e-41 172.2 117 69.2
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 5.8e-41 171.4 117 65.8
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 5.8e-41 171.4 117 65.8
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-41 170.6 117 66.7
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-41 170.6 117 66.7
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 1.7e-40 169.9 158 55.1
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 2.9e-40 169.1 117 65.8
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 4.9e-40 168.3 117 65.0
Gohir.D03G074900 Gossypium hirsutum HOM05D005620 ORTHO05D002193 1.1e-39 167.2 115 66.1
Gorai.003G086400 Gossypium raimondii HOM05D005620 ORTHO05D002193 1.1e-39 167.2 115 66.1
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 1.4e-39 166.8 116 66.4
Migut.K00117 Erythranthe guttata HOM05D005620 ORTHO05D002193 1.8e-39 166.4 166 53.0
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 1.8e-39 166.4 117 65.0
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 1.8e-39 166.4 117 65.0
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 3.2e-39 165.6 131 61.1
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 4.1e-39 165.2 156 53.2
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 1.6e-38 163.3 115 61.7
Gohir.A02G123602 Gossypium hirsutum HOM05D005620 ORTHO05D002193 1.6e-38 163.3 117 64.1
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 1.6e-38 163.3 158 53.2
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 2.7e-38 162.5 148 55.4
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 6.0e-38 161.4 115 60.9
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 7.8e-38 161.0 129 58.1
DCAR_019171 Daucus carota HOM05D005620 ORTHO05D002193 7.8e-38 161.0 143 58.0
SEGI_06428 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 1.7e-37 159.8 118 63.6
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 3.0e-37 159.1 117 61.5
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 6.6e-37 157.9 160 51.9
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.1e-36 157.1 117 59.8
vmacro21954 Vaccinium macrocarpon HOM05D005620 ORTHO05D002193 1.9e-36 156.4 170 51.2
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 3.3e-36 155.6 104 76.0
BolC6t36428H Brassica oleracea HOM05D005620 ORTHO05D002193 4.3e-36 155.2 158 57.6
BolC6t38904H Brassica oleracea HOM05D005620 ORTHO05D002193 2.1e-35 152.9 100 80.0
Cc06_g18370 Coffea canephora HOM05D005620 ORTHO05D002193 1.1e-34 150.6 152 52.0
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 1.1e-34 150.6 115 59.1
Peaxi162Scf00130g01016 Petunia axillaris HOM05D005620 ORTHO05D002193 1.2e-33 147.1 117 61.5
Nitab4.5_0000826g0250 Nicotiana tabacum HOM05D005620 ORTHO05D002193 3.4e-33 145.6 117 59.8
Nitab4.5_0001618g0310 Nicotiana tabacum HOM05D005620 ORTHO05D002193 2.9e-32 142.5 117 59.0
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 2.9e-32 142.5 118 56.8
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 3.2e-31 139.0 124 52.4
CAN.G1237.2 Capsicum annuum HOM05D005620 ORTHO05D002193 5.4e-31 138.3 169 45.6
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 1.6e-30 136.7 119 58.0
Pp3c14_3710 Physcomitrium patens HOM05D005620 ORTHO05D002193 8.6e-29 131.0 168 44.6
MBI19_g08310_MAGBIO Magnolia biondii HOM05D005620 ORTHO05D002193 4.3e-28 128.6 79 72.2
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 1.2e-27 127.1 166 46.4
AUR62026123 Chenopodium quinoa HOM05D005620 ORTHO05D002193 2.0e-25 119.8 76 71.1
Glyma.10G105800 Glycine max HOM05D005620 ORTHO05D002193 9.9e-25 117.5 71 73.2
SHI24582 Sapria himalayana HOM05D005620 ORTHO05D002193 1.7e-24 116.7 117 52.1
PGSC0003DMG403012723 Solanum tuberosum HOM05D005620 ORTHO05D002193 1.9e-23 113.2 78 62.8
CBR_g30450 Chara braunii HOM05D005620 ORTHO05D002193 8.1e-19 97.8 163 36.2
AUR62024530 Chenopodium quinoa HOM05D005620 ORTHO05D002193 2.4e-18 96.3 115 42.6
CAN.G1442.1 Capsicum annuum HOM05D005620 ORTHO05D002193 1.5e-17 93.6 71 57.7
Hund19124 Selenicereus undatus HOM05D005620 ORTHO05D002193 3.4e-17 92.4 166 36.1
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.2e-16 89.7 70 58.6
QL07p005073 Quercus lobata HOM05D005620 ORTHO05D002193 4.6e-14 82.0 49 71.4
Cre03.g175850 Chlamydomonas reinhardtii HOM05D005620 ORTHO05D002193 2.8e-11 72.8 104 38.5
Haze_19751 Corylus avellana HOM05D005620 ORTHO05D002193 2.4e-10 69.7 46 63.0
MCO09G604 Micromonas commoda HOM05D005620 ORTHO05D002193 1.2e-09 67.4 97 37.1
QL07p005077 Quercus lobata HOM05D005620 ORTHO05D002193 7.6e-09 64.7 44 70.5
unitig_748.g7228 Utricularia gibba HOM05D005620 ORTHO05D002193 3.2e-07 59.3 38 63.2
Oeu029712.1 Olea europaea HOM05D005620 ORTHO05D002193 7.1e-07 58.2 42 59.5
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 9.3e-07 57.8 82 40.2
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 1.6e-06 57.0 77 45.5
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 2.7e-06 56.2 84 39.3
AUR62026122 Chenopodium quinoa HOM05D005620 ORTHO05D002193 2.7e-06 56.2 40 62.5
COL.COLO4_33915 Corchorus olitorius HOM05D005620 ORTHO05D002193 7.8e-06 54.7 38 57.9


User provided reference genes

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