Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25467 Brassica carinata HOM05D001354 ORTHO05D014520 2.1e-29 131.7 68 100.0
A06p11320 Brassica napus HOM05D001354 ORTHO05D002582 9.4e-22 106.3 68 75.0
C05p13440 Brassica napus HOM05D001354 ORTHO05D002582 9.4e-22 106.3 68 79.4
BraA06t24311Z Brassica rapa HOM05D001354 ORTHO05D002582 9.4e-22 106.3 68 75.0
BolC5t30081H Brassica oleracea HOM05D001354 ORTHO05D002582 2.1e-21 105.1 68 77.9
Sp1g13630 Schrenkiella parvula HOM05D001354 ORTHO05D002582 2.6e-19 98.2 66 71.2
BcaB04g17379 Brassica carinata HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
BcaC07g37095 Brassica carinata HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
A08p04340 Brassica napus HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
C08p04610 Brassica napus HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
BolC8t47265H Brassica oleracea HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
BraA08t32460Z Brassica rapa HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 73.5
CAN.G407.72 Capsicum annuum HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 75.0
Solyc03g116810.4 Solanum lycopersicum HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 75.0
Sopen03g035740 Solanum pennellii HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 75.0
PGSC0003DMG400000625 Solanum tuberosum HOM05D001354 ORTHO05D002582 6.3e-18 93.6 68 75.0
Lj9C498T12 Lonicera japonica HOM05D001354 ORTHO05D002582 8.3e-18 93.2 69 76.8
CDE04G2225 Ceratophyllum demersum HOM05D001354 ORTHO05D002582 1.1e-17 92.8 69 72.5
AT1G48900 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 4.1e-17 90.9 68 72.1
Carub.0001s3804 Capsella rubella HOM05D001354 ORTHO05D002582 4.1e-17 90.9 68 72.1
CDE02G0107 Ceratophyllum demersum HOM05D001354 ORTHO05D002582 4.1e-17 90.9 69 71.0
Dinv38131 Davidia involucrata HOM05D001354 ORTHO05D002582 5.3e-17 90.5 68 72.1
Glyma.13G366500 Glycine max HOM05D001354 ORTHO05D002582 5.3e-17 90.5 68 72.1
Glyma.15G006700 Glycine max HOM05D001354 ORTHO05D002582 5.3e-17 90.5 68 72.1
arahy.Tifrunner.gnm1.ann1.5IPV2R Arachis hypogaea HOM05D001354 ORTHO05D002582 7.0e-17 90.1 68 72.1
arahy.Tifrunner.gnm1.ann1.UV9SWK Arachis hypogaea HOM05D001354 ORTHO05D002582 7.0e-17 90.1 68 72.1
Potri.001G253500 Populus trichocarpa HOM05D001354 ORTHO05D002582 7.0e-17 90.1 68 72.1
Rhsim12G0190500 Rhododendron simsii HOM05D001354 ORTHO05D002582 7.0e-17 90.1 69 73.9
Sabra16G0154300 Salix brachista HOM05D001354 ORTHO05D002582 7.0e-17 90.1 68 72.1
TAR636G3220 Trochodendron aralioides HOM05D001354 ORTHO05D002582 7.0e-17 90.1 68 72.1
Duzib160G0508 Durio zibethinus HOM05D001354 ORTHO05D002582 9.1e-17 89.7 68 70.6
QL04p090747 Quercus lobata HOM05D001354 ORTHO05D002582 9.1e-17 89.7 68 70.6
QL09p016638 Quercus lobata HOM05D001354 ORTHO05D002582 9.1e-17 89.7 68 70.6
Sp1g35810 Schrenkiella parvula HOM05D001354 ORTHO05D002582 9.1e-17 89.7 68 70.6
SEGI_21139 Sequoiadendron giganteum HOM05D001354 ORTHO05D014520 9.1e-17 89.7 69 69.6
CARHR038890 Cardamine hirsuta HOM05D001354 ORTHO05D002582 1.2e-16 89.4 68 70.6
ECA232G4844 Erigeron canadensis HOM05D001354 ORTHO05D002582 1.2e-16 89.4 68 70.6
arahy.Tifrunner.gnm1.ann1.CWCJ30 Arachis hypogaea HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 72.1
MSTRG.11148 Avicennia marina HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
BcaC08g43088 Brassica carinata HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
C06p03470 Brassica napus HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
BolC6t35487H Brassica oleracea HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
BraA06t23619Z Brassica rapa HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
COL.COLO4_11914 Corchorus olitorius HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Haze_16573 Corylus avellana HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Lsat_1_v5_gn_4_87641 Lactuca sativa HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Lj5C74G15 Lonicera japonica HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Manes.11G058150 Manihot esculenta HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Nn3g20753 Nelumbo nucifera HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Potri.016G112800 Populus trichocarpa HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
QL05p030676 Quercus lobata HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Rhsim08G0212200 Rhododendron simsii HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Sabra16G0108500 Salix brachista HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Thecc.06G030200 Theobroma cacao HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
vmacro19007 Vaccinium macrocarpon HOM05D001354 ORTHO05D002582 1.6e-16 89.0 68 70.6
Actinidia15752 Actinidia chinensis HOM05D001354 ORTHO05D002582 2.0e-16 88.6 68 70.6
SalBow2G1608 Salvia bowleyana HOM05D001354 ORTHO05D014520 2.0e-16 88.6 68 70.6
Duzib192G0646 Durio zibethinus HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
Gohir.A10G073000 Gossypium hirsutum HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
Gohir.D10G078000 Gossypium hirsutum HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
Gorai.011G084700 Gossypium raimondii HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
Phvul.005G179000 Phaseolus vulgaris HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
VMungo1080G0941 Vigna mungo HOM05D001354 ORTHO05D002582 2.7e-16 88.2 68 69.1
MSTRG.22753 Avicennia marina HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 69.1
Thhalv10011425m.g Eutrema salsugineum HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 67.6
Lj3g0022067 Lotus japonicus HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 69.1
Lalb_Chr04g0262351 Lupinus albus HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 69.1
Nn2g12780 Nelumbo nucifera HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 69.1
Peaxi162Scf00332g00534 Petunia axillaris HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 70.6
PGR031G3144 Punica granatum HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 70.6
THA.LOC104800439 Tarenaya hassleriana HOM05D001354 ORTHO05D002582 3.5e-16 87.8 68 69.1
ATR0691G124 Amborella trichopoda HOM05D001354 ORTHO05D002582 4.5e-16 87.4 67 70.1
Aqoxy7G00828 Aquilegia oxysepala HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 69.1
Cpa.g.sc167.7 Carica papaya HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 69.1
CiPaw.01G249200 Carya illinoinensis HOM05D001354 ORTHO05D002582 4.5e-16 87.4 67 70.1
Ca_12524_v3 Cicer arietinum L. HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 67.6
Eucgr.F03884 Eucalyptus grandis HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 70.6
HanXRQChr04g0097901 Helianthus annuus HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 69.1
Lsat_1_v5_gn_1_34301 Lactuca sativa HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 69.1
MBI04_g36309_MAGBIO Magnolia biondii HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 69.1
Manes.04G111700 Manihot esculenta HOM05D001354 ORTHO05D002582 4.5e-16 87.4 67 70.1
PGSC0003DMG400028629 Solanum tuberosum HOM05D001354 ORTHO05D002582 4.5e-16 87.4 68 67.6
TAR624G0075 Trochodendron aralioides HOM05D001354 ORTHO05D002582 4.5e-16 87.4 67 70.1
ATR0751G012 Amborella trichopoda HOM05D001354 ORTHO05D002582 5.9e-16 87.0 67 70.1
Migut.I00754 Erythranthe guttata HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 69.1
Thhalv10009795m.g Eutrema salsugineum HOM05D001354 ORTHO05D002582 5.9e-16 87.0 66 60.6
Glyma.07G029200 Glycine max HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 69.1
Glyma.08G213600 Glycine max HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 69.1
Nitab4.5_0003463g0040 Nicotiana tabacum HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 70.6
Nitab4.5_0008560g0030 Nicotiana tabacum HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 70.6
Phvul.010G156800 Phaseolus vulgaris HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 69.1
Solyc12g042740.2 Solanum lycopersicum HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 67.6
Sopen12g021920 Solanum pennellii HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 67.6
VMungo0331G0245 Vigna mungo HOM05D001354 ORTHO05D002582 5.9e-16 87.0 68 69.1
CiPaw.02G157800 Carya illinoinensis HOM05D001354 ORTHO05D002582 7.7e-16 86.7 68 69.1
Lalb_Chr25g0279251 Lupinus albus HOM05D001354 ORTHO05D002582 7.7e-16 86.7 68 67.6
MD17G1213700 Malus domestica HOM05D001354 ORTHO05D002582 7.7e-16 86.7 68 67.6
AL1G55710 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 1.0e-15 86.3 69 71.0
AL1G55720 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 1.0e-15 86.3 69 71.0
Sed0001805 Sechium edule HOM05D001354 ORTHO05D002582 1.0e-15 86.3 68 67.6
Sed0014737 Sechium edule HOM05D001354 ORTHO05D002582 1.0e-15 86.3 68 67.6
Sed0027732 Sechium edule HOM05D001354 ORTHO05D002582 1.0e-15 86.3 68 67.6
CANSAT56G2642 Cannabis sativa HOM05D001354 ORTHO05D002582 1.3e-15 85.9 67 68.7
Ca_01051_v3 Cicer arietinum L. HOM05D001354 ORTHO05D002582 1.3e-15 85.9 68 66.2
HanXRQChr02g0033421 Helianthus annuus HOM05D001354 ORTHO05D002582 1.3e-15 85.9 68 67.6
Oeu018807.1 Olea europaea HOM05D001354 ORTHO05D002582 1.3e-15 85.9 68 67.6
Cfa001952 Carpinus fangiana HOM05D001354 ORTHO05D002582 1.7e-15 85.5 67 68.7
Migut.H01871 Erythranthe guttata HOM05D001354 ORTHO05D002582 1.7e-15 85.5 68 67.6
Prupe.3G089600 Prunus persica HOM05D001354 ORTHO05D002582 1.7e-15 85.5 68 67.6
Hund06551 Selenicereus undatus HOM05D001354 ORTHO05D002582 1.7e-15 85.5 69 66.7
Aa31LG7G80 Aethionema arabicum HOM05D001354 ORTHO05D002582 2.2e-15 85.1 68 64.7
Eucgr.I00867 Eucalyptus grandis HOM05D001354 ORTHO05D002582 2.2e-15 85.1 68 69.1
Os01g0772800 Oryza sativa ssp. japonica HOM05D001354 ORTHO05D002582 2.2e-15 85.1 69 65.2
SMO339G0068 Selaginella moellendorffii HOM05D001354 ORTHO05D002582 2.2e-15 85.1 66 69.7
arahy.Tifrunner.gnm1.ann1.DTT4AE Arachis hypogaea HOM05D001354 ORTHO05D002582 2.9e-15 84.7 68 69.1
ClCG07G012210 Citrullus lanatus HOM05D001354 ORTHO05D002582 2.9e-15 84.7 68 66.2
MELO3C017841.2 Cucumis melo HOM05D001354 ORTHO05D002582 2.9e-15 84.7 68 66.2
CsaV3_4G001950 Cucumis sativus L. HOM05D001354 ORTHO05D002582 2.9e-15 84.7 68 66.2
Sed0019227 Sechium edule HOM05D001354 ORTHO05D002582 2.9e-15 84.7 68 66.2
HPP92_005474 Vanilla planifolia HOM05D001354 ORTHO05D002582 2.9e-15 84.7 69 63.8
CBR_g41454 Chara braunii HOM05D001354 ORTHO05D002582 3.8e-15 84.3 67 64.2
SEGI_16228 Sequoiadendron giganteum HOM05D001354 ORTHO05D002582 3.8e-15 84.3 68 66.2
vmacro16880 Vaccinium macrocarpon HOM05D001354 ORTHO05D002582 3.8e-15 84.3 67 71.6
Psat7g257320 Pisum sativum HOM05D001354 ORTHO05D002582 5.0e-15 84.0 68 64.7
TPR.G38698 Trifolium pratense HOM05D001354 ORTHO05D002582 5.0e-15 84.0 68 64.7
unitig_744.g24451 Utricularia gibba HOM05D001354 ORTHO05D014520 5.0e-15 84.0 68 64.7
Pp3c17_5890 Physcomitrium patens HOM05D001354 ORTHO05D002582 6.5e-15 83.6 68 66.2
Pp3s318_20 Physcomitrium patens HOM05D001354 ORTHO05D002582 6.5e-15 83.6 68 66.2
Pp3s318_30 Physcomitrium patens HOM05D001354 ORTHO05D002582 6.5e-15 83.6 68 66.2
Carub.0008s0935 Capsella rubella HOM05D001354 ORTHO05D002582 8.5e-15 83.2 68 64.7
Medtr4g010050 Medicago truncatula HOM05D001354 ORTHO05D002582 8.5e-15 83.2 68 64.7
Peaxi162Scf01093g00218 Petunia axillaris HOM05D001354 ORTHO05D002582 8.5e-15 83.2 67 65.7
Mapoly0001s0238 Marchantia polymorpha HOM05D001354 ORTHO05D002582 1.5e-14 82.4 68 66.2
Oeu004222.1 Olea europaea HOM05D001354 ORTHO05D002582 1.5e-14 82.4 65 69.2
SHI12844 Sapria himalayana HOM05D001354 ORTHO05D002582 1.9e-14 82.0 67 64.2
CSS0046572 Camellia sinensis var. sinensis HOM05D001354 ORTHO05D002582 2.5e-14 81.6 68 66.2
Ciclev10025458m.g Citrus clementina HOM05D001354 ORTHO05D002582 2.5e-14 81.6 68 66.2
AagrBONN_evm.TU.Sc2ySwM_368.576 Anthoceros agrestis HOM05D001354 ORTHO05D002582 5.5e-14 80.5 68 64.7
TPR.G37269 Trifolium pratense HOM05D001354 ORTHO05D002582 9.4e-14 79.7 68 61.8
FvH4_2g33430 Fragaria vesca HOM05D001354 ORTHO05D002582 1.2e-13 79.3 62 71.0
FAN20G1566 Fragaria x ananassa HOM05D001354 ORTHO05D002582 1.2e-13 79.3 62 71.0
FAN24G0262 Fragaria x ananassa HOM05D001354 ORTHO05D002582 1.2e-13 79.3 62 71.0
FAN27G1035 Fragaria x ananassa HOM05D001354 ORTHO05D002582 1.2e-13 79.3 62 71.0
DCAR_025520 Daucus carota HOM05D001354 ORTHO05D002582 1.6e-13 79.0 62 69.4
Hma1.2p1_0495F.1_g165670 Hydrangea macrophylla HOM05D001354 ORTHO05D002582 1.6e-13 79.0 65 63.1
AL1G27400 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 2.1e-13 78.6 65 66.2
Nitab4.5_0001271g0100 Nicotiana tabacum HOM05D001354 ORTHO05D002582 2.7e-13 78.2 62 67.7
Nitab4.5_0003157g0040 Nicotiana tabacum HOM05D001354 ORTHO05D002582 2.7e-13 78.2 62 67.7
AT1G15310 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 4.7e-13 77.4 65 64.6
Cc04_g04500 Coffea canephora HOM05D001354 ORTHO05D002582 4.7e-13 77.4 62 67.7
AUR62016327 Chenopodium quinoa HOM05D001354 ORTHO05D002582 6.1e-13 77.0 63 66.7
SGA_v2.0_scaffold5G02709 Striga asiatica HOM05D001354 ORTHO05D002582 1.0e-12 76.3 68 60.3
AT5G49500 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 1.4e-12 75.9 68 63.2
Atru.chr1.2899 Acer truncatum HOM05D001354 ORTHO05D002582 2.3e-12 75.1 68 63.2
RcHm_v2.0_Chr6g0309101 Rosa chinensis HOM05D001354 ORTHO05D002582 3.0e-12 74.7 62 66.1
Atru.chr1.2894 Acer truncatum HOM05D001354 ORTHO05D002582 4.0e-12 74.3 62 66.1
TWI12G1327 Tripterygium wilfordii HOM05D001354 ORTHO05D002582 1.2e-11 72.8 70 58.6
TWI18G0080 Tripterygium wilfordii HOM05D001354 ORTHO05D002582 1.2e-11 72.8 71 60.6
DCAR_028114 Daucus carota HOM05D001354 ORTHO05D002582 1.5e-11 72.4 63 65.1
FAN08G3422 Fragaria x ananassa HOM05D001354 ORTHO05D002582 9.8e-11 69.7 71 59.2
FAN18G2562 Fragaria x ananassa HOM05D001354 ORTHO05D002582 9.8e-11 69.7 71 59.2
Potri.009G047902 Populus trichocarpa HOM05D001354 ORTHO05D002582 2.8e-10 68.2 55 67.3
EL10Ac9g21880 Beta vulgaris HOM05D001354 ORTHO05D002582 3.7e-10 67.8 56 66.1
AUR62011509 Chenopodium quinoa HOM05D001354 ORTHO05D002582 3.7e-10 67.8 56 66.1
Eucgr.C04171 Eucalyptus grandis HOM05D001354 ORTHO05D002582 3.7e-10 67.8 65 64.6
PSO063G5782 Papaver somniferum HOM05D001354 ORTHO05D002582 4.8e-10 67.4 56 66.1
PSO832G2822 Papaver somniferum HOM05D001354 ORTHO05D002582 4.8e-10 67.4 56 66.1
PGR004G2643 Punica granatum HOM05D001354 ORTHO05D002582 6.3e-10 67.0 68 58.8
CARHR015840 Cardamine hirsuta HOM05D001354 ORTHO05D002582 8.3e-10 66.6 64 57.8
Aqoxy7G01239 Aquilegia oxysepala HOM05D001354 ORTHO05D002582 1.8e-09 65.5 65 53.8
COL.COLO4_35925 Corchorus olitorius HOM05D001354 ORTHO05D002582 3.1e-09 64.7 65 56.9
FAN04G2160 Fragaria x ananassa HOM05D001354 ORTHO05D002582 4.1e-09 64.3 69 60.9
TPR.G37156 Trifolium pratense HOM05D001354 ORTHO05D002582 5.4e-09 63.9 64 57.8
FvH4_5g33730 Fragaria vesca HOM05D001354 ORTHO05D002582 7.0e-09 63.5 69 53.6
AagrBONN_evm.TU.Sc2ySwM_368.3165 Anthoceros agrestis HOM05D001354 ORTHO05D002582 9.1e-09 63.2 67 58.2
Rhsim04G0099100 Rhododendron simsii HOM05D001354 ORTHO05D002582 9.1e-09 63.2 66 59.1
Hma1.2p1_0102F.1_g049810 Hydrangea macrophylla HOM05D001354 ORTHO05D014520 4.5e-08 60.8 52 65.4
PRCOL_00004683 Prasinoderma coloniale HOM05D001354 ORTHO05D002582 1.0e-07 59.7 63 46.0
MCO13G058 Micromonas commoda HOM05D001354 ORTHO05D002582 1.3e-07 59.3 64 50.0
Os05g0509500 Oryza sativa ssp. japonica HOM05D001354 ORTHO05D002582 1.1e-06 56.2 67 46.3
Sed0015105 Sechium edule HOM05D001354 ORTHO05D002582 1.5e-06 55.8 66 50.0
SEGI_09614 Sequoiadendron giganteum HOM05D001354 ORTHO05D002582 1.5e-06 55.8 58 58.6
Oeu027844.1 Olea europaea HOM05D001354 ORTHO05D002582 5.5e-06 53.9 65 52.3
Zm00001eb292390 Zea mays HOM05D001354 ORTHO05D002582 9.5e-06 53.1 64 45.3


User provided reference genes

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