Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 7.5e-186 653.7 321 100.0
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 8.6e-182 640.2 318 98.1
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-181 638.6 318 98.1
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-176 622.5 326 94.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-173 611.7 316 95.3
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.0e-171 606.7 316 94.9
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.8e-167 590.5 331 89.4
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 3.1e-163 578.6 324 89.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 6.8e-163 577.4 324 89.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-161 572.0 324 89.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.9e-161 571.2 326 89.0
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 7.0e-160 567.4 324 89.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.5e-157 559.7 327 85.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-155 553.5 327 87.5
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 6.4e-153 544.3 323 86.1
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 5.1e-150 534.6 290 89.3
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 3.3e-149 531.9 304 88.8
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 9.5e-149 530.4 291 89.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.1e-148 529.3 370 73.8
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.2e-146 523.5 290 87.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.3e-142 510.0 319 80.9
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 5.8e-138 494.6 363 71.9
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 4.6e-135 485.0 326 77.3
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 9.6e-133 477.2 322 74.5
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.3e-132 476.9 322 74.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.3e-132 476.9 322 74.2
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 3.4e-130 468.8 316 74.1
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.7e-129 466.5 319 73.7
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.7e-129 466.5 317 74.8
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 6.4e-129 464.5 319 73.4
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.4e-128 463.4 316 72.8
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.9e-128 463.0 322 72.0
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.4e-128 462.6 313 72.2
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 5.4e-128 461.5 317 73.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 7.1e-128 461.1 316 72.5
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 9.3e-128 460.7 319 71.5
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.2e-127 460.3 316 71.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.6e-127 459.9 316 71.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.7e-127 459.1 319 72.4
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 4.6e-127 458.4 313 70.9
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 4.6e-127 458.4 313 70.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.0e-126 457.2 318 70.1
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.0e-126 457.2 322 72.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.3e-126 456.8 319 70.5
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.8e-126 456.4 316 72.2
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.0e-126 455.7 316 70.6
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 3.0e-126 455.7 312 72.1
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.1e-126 454.9 320 71.2
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 8.7e-126 454.1 317 71.3
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.1e-125 453.8 315 71.7
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 1.1e-125 453.8 321 70.1
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.9e-125 453.0 318 70.4
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.5e-125 452.6 321 71.7
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.5e-125 452.6 319 70.5
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 4.3e-125 451.8 317 71.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 5.6e-125 451.4 319 72.1
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 7.4e-125 451.1 318 70.4
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 1.3e-124 450.3 316 71.5
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.6e-124 449.9 314 71.7
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.8e-124 449.1 325 68.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.8e-124 449.1 320 70.3
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.8e-124 449.1 322 70.8
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.7e-124 448.7 317 69.7
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.7e-124 448.7 317 69.7
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 3.7e-124 448.7 323 70.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.1e-124 447.6 318 70.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.4e-123 446.8 322 70.8
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.4e-123 446.8 316 70.6
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.4e-123 446.0 320 70.0
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 5.3e-123 444.9 317 70.0
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 9.0e-123 444.1 316 70.3
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.2e-122 443.7 320 71.2
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.0e-122 443.0 317 70.7
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.6e-122 442.6 316 70.6
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 9.9e-122 440.7 320 70.3
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.3e-121 440.3 316 70.6
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.9e-121 439.1 312 70.2
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 2.9e-121 439.1 324 68.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.7e-119 432.6 323 67.2
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.7e-119 432.6 305 68.5
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 6.0e-119 431.4 320 67.5
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 6.0e-119 431.4 313 69.3
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.3e-118 430.3 318 67.9
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.8e-118 429.9 318 67.3
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.9e-118 428.7 325 67.4
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 5.1e-118 428.3 319 68.0
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 5.1e-118 428.3 320 66.9
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 6.7e-118 427.9 319 67.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 9.6e-117 424.1 322 66.5
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 6.9e-115 417.9 262 76.3
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 2.0e-114 416.4 318 65.1
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.6e-114 416.0 314 67.5
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-114 414.8 265 76.6
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.3e-113 413.7 316 65.8
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 2.2e-113 412.9 365 60.8
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 3.2e-112 409.1 260 76.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-111 406.8 306 68.3
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-111 406.8 307 68.7
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.6e-111 405.2 380 58.4
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-110 403.3 283 70.7
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 6.7e-110 401.4 313 64.2
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 4.8e-108 395.2 290 69.3
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.4e-107 393.7 318 62.6
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 1.8e-107 393.3 319 61.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 4.1e-107 392.1 324 63.3
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.0e-107 391.0 321 62.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 3.4e-106 389.0 316 65.2
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 5.9e-106 388.3 260 74.2
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 5.0e-105 385.2 314 61.8
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.2e-104 382.5 239 77.4
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 7.2e-104 381.3 302 62.9
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.6e-103 380.2 323 61.0
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.1e-103 379.8 323 60.7
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 3.6e-103 379.0 314 59.6
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 7.9e-103 377.9 229 79.5
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 1.4e-102 377.1 318 59.4
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.8e-102 376.7 330 61.5
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 6.7e-102 374.8 257 70.4
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 4.3e-101 372.1 287 62.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.1e-99 367.5 347 58.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 6.9e-99 364.8 340 59.7
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 5.9e-98 361.7 240 75.4
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.9e-96 356.7 330 57.0
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 2.1e-95 353.2 234 73.1
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.0e-94 349.4 329 56.8
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-93 347.1 239 73.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 9.7e-93 344.4 303 62.4
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.8e-92 342.8 303 62.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 8.2e-92 341.3 314 62.7
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.1e-91 339.3 304 62.8
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-90 336.7 304 61.8
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-90 336.3 324 61.7
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-90 335.9 255 69.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-90 335.5 303 61.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-90 335.5 303 61.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-90 335.5 303 61.4
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 5.9e-90 335.1 294 56.5
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 5.9e-90 335.1 306 62.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.8e-89 332.4 205 78.5
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 5.0e-89 332.0 301 62.1
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 3.2e-88 329.3 304 54.9
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 2.7e-87 326.2 245 69.4
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 2.7e-87 326.2 318 58.8
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-87 325.5 260 66.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.2e-86 322.0 270 59.3
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.3e-85 319.3 289 55.7
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.5e-82 309.3 266 57.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.7e-79 299.7 234 61.5
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.6e-77 293.1 307 54.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.2e-73 280.0 312 53.2
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 6.5e-73 278.5 336 50.0
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-69 267.7 264 59.5
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.2e-68 263.5 201 67.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-68 262.7 176 74.4
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.1e-67 259.6 266 54.9
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.3e-62 243.4 194 66.0
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.7e-60 236.1 310 44.8
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-59 231.5 301 47.2
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.5e-58 229.6 228 57.0
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.0e-57 228.0 153 69.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.3e-57 227.6 300 48.0
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.3e-56 222.6 153 68.6
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.8e-54 217.2 155 68.4
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.9e-52 209.9 245 47.3
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 8.3e-52 208.4 169 58.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.7e-49 200.7 173 60.7
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 8.6e-49 198.4 170 62.4
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.1e-48 198.0 241 43.6
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-48 197.6 250 48.8
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.2e-44 183.7 202 47.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.6e-42 176.0 136 63.2
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.0e-41 174.9 265 38.9
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 3.3e-40 169.9 228 40.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 7.6e-37 158.7 107 71.0
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.5e-32 144.4 124 58.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-31 141.4 122 60.7
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.1e-31 138.7 83 78.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-29 134.4 111 64.0
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 2.2e-28 130.6 77 72.7
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.4e-27 125.9 135 48.1
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-27 125.2 88 67.0
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.3e-20 104.8 54 94.4
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 3.9e-17 93.2 64 73.4
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 5.3e-14 82.8 88 53.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-12 77.0 51 74.5
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-12 77.0 51 74.5
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.4e-12 75.9 51 72.5
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-11 74.3 51 70.6
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 1.3e-09 68.2 83 49.4


User provided reference genes

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