Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16917 Brassica carinata HOM05D000188 ORTHO05D003976 2.1e-49 198.7 104 100.0
C02p48200 Brassica napus HOM05D000188 ORTHO05D003976 6.9e-48 193.7 101 99.0
BolC2t10853H Brassica oleracea HOM05D000188 ORTHO05D003976 6.9e-48 193.7 101 99.0
A02p30660 Brassica napus HOM05D000188 ORTHO05D003976 1.1e-37 159.8 106 82.1
BraA02t08082Z Brassica rapa HOM05D000188 ORTHO05D003976 7.1e-37 157.1 106 81.1
Sp2g11810 Schrenkiella parvula HOM05D000188 ORTHO05D003976 1.1e-34 149.8 115 72.2
CARHR174460 Cardamine hirsuta HOM05D000188 ORTHO05D003976 1.5e-34 149.4 115 74.8
Thhalv10000743m.g Eutrema salsugineum HOM05D000188 ORTHO05D003976 2.5e-34 148.7 115 72.2
AL8G11270 Arabidopsis lyrata HOM05D000188 ORTHO05D003976 4.3e-34 147.9 115 72.2
AT5G47010 Arabidopsis thaliana HOM05D000188 ORTHO05D003976 1.3e-30 136.3 115 67.8
Carub.0008s0082 Capsella rubella HOM05D000188 ORTHO05D003976 5.5e-29 131.0 113 67.3
THA.LOC104806689 Tarenaya hassleriana HOM05D000188 ORTHO05D003976 2.3e-27 125.6 118 61.0
Aa31LG9G5970 Aethionema arabicum HOM05D000188 ORTHO05D003976 3.7e-25 118.2 116 59.5
Cpa.g.sc29.1 Carica papaya HOM05D000188 ORTHO05D003976 1.4e-21 106.3 64 78.1
MD06G1042600 Malus domestica HOM05D000188 ORTHO05D003976 3.2e-21 105.1 116 56.9
Phvul.002G003300 Phaseolus vulgaris HOM05D000188 ORTHO05D003976 7.2e-21 104.0 113 56.6
VMungo1215G0424 Vigna mungo HOM05D000188 ORTHO05D003976 9.3e-21 103.6 113 57.5
Prupe.5G049500 Prunus persica HOM05D000188 ORTHO05D003976 2.1e-20 102.4 116 55.2
Psat2g175000 Pisum sativum HOM05D000188 ORTHO05D003976 1.3e-19 99.8 112 56.2
Lalb_Chr05g0214101 Lupinus albus HOM05D000188 ORTHO05D003976 1.8e-19 99.4 114 59.6
Ca_24627_v3 Cicer arietinum L. HOM05D000188 ORTHO05D003976 3.9e-19 98.2 111 58.6
Glyma.01G202600 Glycine max HOM05D000188 ORTHO05D003976 3.9e-19 98.2 113 55.8
CANSAT21G0831 Cannabis sativa HOM05D000188 ORTHO05D003976 6.7e-19 97.4 112 58.0
Sabra01G0117900 Salix brachista HOM05D000188 ORTHO05D003976 6.7e-19 97.4 107 50.5
arahy.Tifrunner.gnm1.ann1.FN6SHM Arachis hypogaea HOM05D000188 ORTHO05D003976 1.1e-18 96.7 113 54.0
arahy.Tifrunner.gnm1.ann1.L380RS Arachis hypogaea HOM05D000188 ORTHO05D003976 1.1e-18 96.7 113 54.0
FAN04G1896 Fragaria x ananassa HOM05D000188 ORTHO05D003976 1.1e-18 96.7 120 50.0
TPR.G22716 Trifolium pratense HOM05D000188 ORTHO05D003976 1.5e-18 96.3 113 55.8
FAN13G2517 Fragaria x ananassa HOM05D000188 ORTHO05D003976 2.5e-18 95.5 120 50.0
Sed0018558 Sechium edule HOM05D000188 ORTHO05D003976 2.5e-18 95.5 115 56.5
Potri.003G086400 Populus trichocarpa HOM05D000188 ORTHO05D003976 3.3e-18 95.1 108 50.9
Lj2g0002868 Lotus japonicus HOM05D000188 ORTHO05D003976 4.3e-18 94.7 112 59.8
Lalb_Chr16g0379271 Lupinus albus HOM05D000188 ORTHO05D003976 5.7e-18 94.4 114 52.6
ClCG10G001940 Citrullus lanatus HOM05D000188 ORTHO05D003976 7.4e-18 94.0 115 54.8
MELO3C013879.2 Cucumis melo HOM05D000188 ORTHO05D003976 7.4e-18 94.0 115 54.8
CsaV3_3G002080 Cucumis sativus L. HOM05D000188 ORTHO05D003976 7.4e-18 94.0 115 54.8
MD16G1268400 Malus domestica HOM05D000188 ORTHO05D003976 7.4e-18 94.0 113 54.0
TWI15G0852 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 9.7e-18 93.6 115 48.7
Haze_08316 Corylus avellana HOM05D000188 ORTHO05D003976 1.3e-17 93.2 98 58.2
FvH4_5g20920 Fragaria vesca HOM05D000188 ORTHO05D003976 1.3e-17 93.2 84 61.9
FAN18G0956 Fragaria x ananassa HOM05D000188 ORTHO05D003976 1.3e-17 93.2 121 52.1
Potri.001G148100 Populus trichocarpa HOM05D000188 ORTHO05D003976 1.3e-17 93.2 106 52.8
QL12p007494 Quercus lobata HOM05D000188 ORTHO05D003976 1.3e-17 93.2 104 55.8
TWI60G1508 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 1.3e-17 93.2 113 52.2
Cfa012367 Carpinus fangiana HOM05D000188 ORTHO05D003976 2.2e-17 92.4 81 63.0
Medtr5g013820 Medicago truncatula HOM05D000188 ORTHO05D003976 2.2e-17 92.4 110 52.7
TWI81G0847 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 2.2e-17 92.4 113 49.6
Sabra03G0056200 Salix brachista HOM05D000188 ORTHO05D003976 2.8e-17 92.0 81 58.0
FAN08G2510 Fragaria x ananassa HOM05D000188 ORTHO05D003976 3.7e-17 91.7 84 60.7
RcHm_v2.0_Chr7g0207971 Rosa chinensis HOM05D000188 ORTHO05D003976 3.7e-17 91.7 122 51.6
GSVIVG01013247001 Vitis vinifera HOM05D000188 ORTHO05D003976 3.7e-17 91.7 112 55.4
Atru.chr6.1792 Acer truncatum HOM05D000188 ORTHO05D003976 1.1e-16 90.1 56 75.0
Ciclev10033615m.g Citrus clementina HOM05D000188 ORTHO05D003976 1.8e-16 89.4 56 75.0
Sabra01G0116400 Salix brachista HOM05D000188 ORTHO05D003976 1.8e-16 89.4 80 56.2
Lalb_Chr09g0323981 Lupinus albus HOM05D000188 ORTHO05D003976 3.1e-16 88.6 114 53.5
Manes.17G021900 Manihot esculenta HOM05D000188 ORTHO05D003976 3.1e-16 88.6 111 47.7
CiPaw.11G086500 Carya illinoinensis HOM05D000188 ORTHO05D003976 9.0e-16 87.0 68 67.6
Eucgr.E00323 Eucalyptus grandis HOM05D000188 ORTHO05D003976 3.4e-15 85.1 76 59.2
Sc01g0007820 Simmondsia chinensis HOM05D000188 ORTHO05D003976 7.7e-15 84.0 116 45.7
DCAR_008304 Daucus carota HOM05D000188 ORTHO05D003976 1.7e-14 82.8 110 49.1
HanXRQChr03g0086991 Helianthus annuus HOM05D000188 ORTHO05D003976 3.8e-14 81.6 103 50.5
Lsat_1_v5_gn_6_89421 Lactuca sativa HOM05D000188 ORTHO05D003976 3.8e-14 81.6 101 53.5
PGR042G0017 Punica granatum HOM05D000188 ORTHO05D003976 6.5e-14 80.9 111 45.9
Lsat_1_v5_gn_6_68181 Lactuca sativa HOM05D000188 ORTHO05D003976 1.4e-13 79.7 123 47.2
Migut.E00902 Erythranthe guttata HOM05D000188 ORTHO05D003976 1.9e-13 79.3 121 46.3
Solyc08g007110.4 Solanum lycopersicum HOM05D000188 ORTHO05D003976 4.2e-13 78.2 110 50.0
Sopen08g003060 Solanum pennellii HOM05D000188 ORTHO05D003976 4.2e-13 78.2 110 50.0
PGSC0003DMG400034293 Solanum tuberosum HOM05D000188 ORTHO05D003976 4.2e-13 78.2 110 50.0
Dinv25173 Davidia involucrata HOM05D000188 ORTHO05D003976 5.5e-13 77.8 118 44.1
Gohir.D03G169400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 5.5e-13 77.8 85 56.5
Nn6g33690 Nelumbo nucifera HOM05D000188 ORTHO05D003976 5.5e-13 77.8 110 50.0
SGA_v2.0_scaffold20G09241 Striga asiatica HOM05D000188 ORTHO05D003976 5.5e-13 77.8 120 43.3
DCAR_005597 Daucus carota HOM05D000188 ORTHO05D003976 9.4e-13 77.0 107 46.7
Lj8C288T9 Lonicera japonica HOM05D000188 ORTHO05D003976 9.4e-13 77.0 103 52.4
Rhsim07G0121100 Rhododendron simsii HOM05D000188 ORTHO05D003976 9.4e-13 77.0 124 46.8
Oeu019051.3 Olea europaea HOM05D000188 ORTHO05D003976 1.2e-12 76.6 67 58.2
Glyma.11G040200 Glycine max HOM05D000188 ORTHO05D003976 1.6e-12 76.3 114 46.5
Nitab4.5_0005487g0030 Nicotiana tabacum HOM05D000188 ORTHO05D003976 1.6e-12 76.3 67 61.2
PGSC0003DMG400001863 Solanum tuberosum HOM05D000188 ORTHO05D003976 1.6e-12 76.3 116 47.4
Gorai.003G179500 Gossypium raimondii HOM05D000188 ORTHO05D003976 2.7e-12 75.5 85 55.3
SGA_v2.0_scaffold6G03173 Striga asiatica HOM05D000188 ORTHO05D003976 3.6e-12 75.1 114 43.9
Nitab4.5_0008709g0020 Nicotiana tabacum HOM05D000188 ORTHO05D003976 4.6e-12 74.7 59 62.7
Actinidia25934 Actinidia chinensis HOM05D000188 ORTHO05D003976 6.1e-12 74.3 114 50.0
Duzib068G0921 Durio zibethinus HOM05D000188 ORTHO05D003976 6.1e-12 74.3 80 53.8
TAR375G0650 Trochodendron aralioides HOM05D000188 ORTHO05D003976 7.9e-12 73.9 108 50.9
Gohir.A03G003000 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.0e-11 73.6 81 54.3
CSS0041371 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 1.8e-11 72.8 61 62.3
Peaxi162Scf00102g00730 Petunia axillaris HOM05D000188 ORTHO05D003976 1.8e-11 72.8 112 45.5
Migut.E00804 Erythranthe guttata HOM05D000188 ORTHO05D003976 2.3e-11 72.4 109 42.2
Gohir.A08G160500 Gossypium hirsutum HOM05D000188 ORTHO05D003976 2.3e-11 72.4 78 52.6
Duzib205G1433 Durio zibethinus HOM05D000188 ORTHO05D003976 3.9e-11 71.6 118 46.6
CAN.G572.54 Capsicum annuum HOM05D000188 ORTHO05D003976 5.1e-11 71.2 117 44.4
Gohir.D08G180800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 5.1e-11 71.2 78 51.3
Gorai.004G189700 Gossypium raimondii HOM05D000188 ORTHO05D003976 5.1e-11 71.2 78 51.3
Nitab4.5_0004832g0040 Nicotiana tabacum HOM05D000188 ORTHO05D003976 6.7e-11 70.9 90 50.0
Sopen08g026010 Solanum pennellii HOM05D000188 ORTHO05D003976 6.7e-11 70.9 122 47.5
COL.COLO4_17123 Corchorus olitorius HOM05D000188 ORTHO05D003976 8.8e-11 70.5 78 51.3
Oeu053049.1 Olea europaea HOM05D000188 ORTHO05D003976 1.5e-10 69.7 109 44.0
vmacro14146 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 1.5e-10 69.7 118 44.1
Nitab4.5_0001444g0010 Nicotiana tabacum HOM05D000188 ORTHO05D003976 2.5e-10 68.9 113 47.8
Actinidia31476 Actinidia chinensis HOM05D000188 ORTHO05D003976 3.3e-10 68.6 113 41.6
AUR62018790 Chenopodium quinoa HOM05D000188 ORTHO05D003976 3.3e-10 68.6 124 41.9
AUR62007211 Chenopodium quinoa HOM05D000188 ORTHO05D003976 5.7e-10 67.8 124 41.9
Thecc.03G235600 Theobroma cacao HOM05D000188 ORTHO05D003976 7.4e-10 67.4 78 50.0
TAR629G0968 Trochodendron aralioides HOM05D000188 ORTHO05D003976 7.4e-10 67.4 110 49.1
CSS0042114 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 9.7e-10 67.0 61 59.0
Cc08_g01700 Coffea canephora HOM05D000188 ORTHO05D003976 1.7e-09 66.2 118 44.1
Solyc08g077420.3 Solanum lycopersicum HOM05D000188 ORTHO05D003976 1.7e-09 66.2 113 44.2
ECA233G4074 Erigeron canadensis HOM05D000188 ORTHO05D003976 2.8e-09 65.5 127 39.4
Oeu039350.3 Olea europaea HOM05D000188 ORTHO05D003976 2.8e-09 65.5 122 41.0
Gohir.A09G197800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 4.8e-09 64.7 103 45.6
Nn1g00076 Nelumbo nucifera HOM05D000188 ORTHO05D003976 4.8e-09 64.7 109 45.0
Nn1g00669 Nelumbo nucifera HOM05D000188 ORTHO05D003976 4.8e-09 64.7 109 45.0
unitig_22.g5496 Utricularia gibba HOM05D000188 ORTHO05D003976 6.3e-09 64.3 117 41.0
MBI04_g03344_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D003976 1.1e-08 63.5 104 46.2
Lj2C248G9 Lonicera japonica HOM05D000188 ORTHO05D003976 1.8e-08 62.8 118 44.1
Gohir.D09G192400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 5.3e-08 61.2 103 43.7
Gorai.006G215300 Gossypium raimondii HOM05D000188 ORTHO05D003976 5.3e-08 61.2 103 43.7
Ah.07g199630 Amaranthus hybridus HOM05D000188 ORTHO05D003976 6.9e-08 60.8 113 43.4
Peaxi162Scf00084g00613 Petunia axillaris HOM05D000188 ORTHO05D003976 6.9e-08 60.8 98 43.9
CDE06G0953 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 9.1e-08 60.5 101 41.6
CDE12G0177 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 9.1e-08 60.5 101 43.6
PSO063G6653 Papaver somniferum HOM05D000188 ORTHO05D003976 2.0e-07 59.3 92 42.4
PSO782G3028 Papaver somniferum HOM05D000188 ORTHO05D003976 2.0e-07 59.3 92 42.4
Ah.12g053730 Amaranthus hybridus HOM05D000188 ORTHO05D003976 4.5e-07 58.2 126 40.5
Aqoxy3G02561 Aquilegia oxysepala HOM05D000188 ORTHO05D003976 7.7e-07 57.4 36 72.2
vmacro00364 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 1.0e-06 57.0 57 57.9
ATR1136G154 Amborella trichopoda HOM05D000188 ORTHO05D003976 3.8e-06 55.1 96 42.7
EL10Ac5g12207 Beta vulgaris HOM05D000188 ORTHO05D003976 3.8e-06 55.1 122 38.5


User provided reference genes

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