Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g12941 Brassica carinata HOM05D003978 ORTHO05D006033 4.2e-44 181.0 95 100.0
C02p01870 Brassica napus HOM05D024329 ORTHO05D024034 3.3e-25 118.2 63 100.0
Sp6g38470 Schrenkiella parvula HOM05D003978 ORTHO05D006033 7.5e-17 90.5 54 83.3
AL6G13910 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 2.8e-16 88.6 50 86.0
AT5G04280 Arabidopsis thaliana HOM05D003978 ORTHO05D006033 2.8e-16 88.6 50 86.0
CARHR209000 Cardamine hirsuta HOM05D003978 ORTHO05D006033 3.7e-16 88.2 50 86.0
Aa31LG1G21070 Aethionema arabicum HOM05D003978 ORTHO05D006033 6.3e-16 87.4 50 84.0
Carub.0006s0323 Capsella rubella HOM05D003978 ORTHO05D006033 6.3e-16 87.4 47 89.4
A03p01600 Brassica napus HOM05D003978 ORTHO05D006033 1.8e-15 85.9 55 81.8
C03p01930 Brassica napus HOM05D003978 ORTHO05D006033 1.8e-15 85.9 55 81.8
BolC3t12747H Brassica oleracea HOM05D003978 ORTHO05D006033 1.8e-15 85.9 55 81.8
BraA03t09534Z Brassica rapa HOM05D003978 ORTHO05D006033 1.8e-15 85.9 55 81.8
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 9.1e-15 83.6 48 83.3
THA.LOC104823202 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 5.9e-14 80.9 48 79.2
BolC2t06145H Brassica oleracea HOM05D024329 ORTHO05D024034 3.8e-13 78.2 71 60.6
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 5.0e-13 77.8 48 77.1
Manes.10G051200 Manihot esculenta HOM05D003978 ORTHO05D006033 1.5e-12 76.3 48 75.0
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.5e-12 76.3 48 75.0
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 1.5e-12 76.3 48 75.0
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 1.9e-12 75.9 48 75.0
Cc02_g10770 Coffea canephora HOM05D003978 ORTHO05D006033 2.5e-12 75.5 48 72.9
COL.COLO4_36551 Corchorus olitorius HOM05D003978 ORTHO05D006033 5.5e-12 74.3 47 74.5
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 9.5e-12 73.6 53 64.2
CSS0027147 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 1.6e-11 72.8 48 70.8
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 1.6e-11 72.8 48 70.8
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 1.6e-11 72.8 47 70.2
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 1.6e-11 72.8 47 70.2
Atru.chr12.875 Acer truncatum HOM05D003978 ORTHO05D006033 2.8e-11 72.0 52 63.5
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 3.6e-11 71.6 47 68.1
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 4.7e-11 71.2 47 68.1
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 4.7e-11 71.2 52 63.5
Cpa.g.sc53.147 Carica papaya HOM05D003978 ORTHO05D006033 6.1e-11 70.9 48 68.8
Ciclev10032520m.g Citrus clementina HOM05D003978 ORTHO05D006033 1.0e-10 70.1 41 78.0
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 1.0e-10 70.1 52 61.5
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 1.0e-10 70.1 52 61.5
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 1.0e-10 70.1 52 61.5
Sed0020000 Sechium edule HOM05D003978 ORTHO05D006033 1.0e-10 70.1 47 68.1
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 1.0e-10 70.1 52 61.5
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 1.4e-10 69.7 48 66.7
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 1.4e-10 69.7 47 66.0
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 1.4e-10 69.7 47 66.0
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 1.4e-10 69.7 49 65.3
Prupe.2G206800 Prunus persica HOM05D003978 ORTHO05D006033 1.4e-10 69.7 49 65.3
Gohir.A10G201200 Gossypium hirsutum HOM05D003978 ORTHO05D006033 1.8e-10 69.3 47 68.1
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 1.8e-10 69.3 47 68.1
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 1.8e-10 69.3 47 68.1
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 1.8e-10 69.3 48 66.7
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 1.8e-10 69.3 48 66.7
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 1.8e-10 69.3 48 66.7
Phvul.007G025050 Phaseolus vulgaris HOM05D003978 ORTHO05D006033 2.3e-10 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 3.0e-10 68.6 52 59.6
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 3.0e-10 68.6 52 59.6
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 3.0e-10 68.6 48 64.6
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 4.0e-10 68.2 48 62.5
QL08p053633 Quercus lobata HOM05D003978 ORTHO05D006033 4.0e-10 68.2 47 66.0
SGA_v2.0_scaffold51G18710 Striga asiatica HOM05D003978 ORTHO05D006033 4.0e-10 68.2 48 66.7
THA.LOC104809978 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 4.0e-10 68.2 48 64.6
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 5.2e-10 67.8 48 62.5
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 5.2e-10 67.8 52 61.5
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 5.2e-10 67.8 52 61.5
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 5.2e-10 67.8 48 62.5
Actinidia03846 Actinidia chinensis HOM05D003978 ORTHO05D006033 6.8e-10 67.4 52 57.7
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 6.8e-10 67.4 47 63.8
Lalb_Chr03g0036261 Lupinus albus HOM05D003978 ORTHO05D006033 6.8e-10 67.4 48 62.5
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 6.8e-10 67.4 49 63.3
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 8.8e-10 67.0 48 64.6
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 8.8e-10 67.0 48 64.6
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 8.8e-10 67.0 47 66.0
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 1.2e-09 66.6 47 63.8
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 1.2e-09 66.6 48 62.5
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 1.2e-09 66.6 44 65.9
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 1.5e-09 66.2 48 60.4
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 1.5e-09 66.2 48 64.6
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 1.5e-09 66.2 52 57.7
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 1.5e-09 66.2 47 59.6
CSS0005536 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 2.0e-09 65.9 48 60.4
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 2.0e-09 65.9 48 62.5
Rhsim03G0115000 Rhododendron simsii HOM05D003978 ORTHO05D006033 2.0e-09 65.9 48 62.5
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 2.6e-09 65.5 52 57.7
Lalb_Chr19g0129381 Lupinus albus HOM05D003978 ORTHO05D006033 2.6e-09 65.5 48 60.4
Solyc11g008210.3 Solanum lycopersicum HOM05D003978 ORTHO05D006033 2.6e-09 65.5 48 60.4
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 2.6e-09 65.5 48 60.4
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 3.4e-09 65.1 49 61.2
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 3.4e-09 65.1 48 64.6
Sc10g0008920 Simmondsia chinensis HOM05D003978 ORTHO05D006033 3.4e-09 65.1 45 64.4
Rhsim03G0089800 Rhododendron simsii HOM05D003978 ORTHO05D006033 4.4e-09 64.7 48 64.6
Sed0011758 Sechium edule HOM05D003978 ORTHO05D006033 4.4e-09 64.7 48 62.5
GSVIVG01033666001 Vitis vinifera HOM05D003978 ORTHO05D000124 4.4e-09 64.7 52 59.6
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 62.5
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 64.6
Oeu033869.1 Olea europaea HOM05D003978 ORTHO05D006033 5.7e-09 64.3 106 38.7
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 62.5
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 62.5
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 62.5
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 5.7e-09 64.3 48 62.5
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 7.5e-09 63.9 48 58.3
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 7.5e-09 63.9 48 60.4
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 9.8e-09 63.5 47 61.7
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 9.8e-09 63.5 52 55.8
EL10Ac7g16661 Beta vulgaris HOM05D003978 ORTHO05D006033 1.3e-08 63.2 48 62.5
Nitab4.5_0001278g0040 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.3e-08 63.2 48 58.3
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 1.7e-08 62.8 47 61.7
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN01G2622 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN03G0654 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN06G3745 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN06G5022 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN10G1475 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
FAN10G2862 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 58.3
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 1.7e-08 62.8 45 62.2
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 1.7e-08 62.8 45 62.2
Psat6g229760 Pisum sativum HOM05D003978 ORTHO05D006033 1.7e-08 62.8 52 53.8
vmacro07306 Vaccinium macrocarpon HOM05D003978 ORTHO05D006033 1.7e-08 62.8 48 62.5
Nitab4.5_0001359g0090 Nicotiana tabacum HOM05D003978 ORTHO05D006033 2.2e-08 62.4 48 58.3
Zm00001eb053020 Zea mays HOM05D003978 ORTHO05D006033 2.2e-08 62.4 52 53.8
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 2.8e-08 62.0 48 60.4
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 2.8e-08 62.0 48 58.3
Sed0027411 Sechium edule HOM05D003978 ORTHO05D006033 2.8e-08 62.0 50 56.0
CSS0048765 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 4.9e-08 61.2 48 58.3
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 4.9e-08 61.2 48 58.3
AUR62026923 Chenopodium quinoa HOM05D003978 ORTHO05D006033 6.3e-08 60.8 48 58.3
AUR62042058 Chenopodium quinoa HOM05D003978 ORTHO05D006033 6.3e-08 60.8 48 58.3
AT1G60650 Arabidopsis thaliana HOM05D003978 ORTHO05D006033 8.3e-08 60.5 48 56.2
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 8.3e-08 60.5 48 60.4
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 1.8e-07 59.3 48 58.3
ECA238G3060 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.8e-07 59.3 85 41.2
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 1.8e-07 59.3 48 56.2
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 2.4e-07 58.9 52 53.8
Haze_20513 Corylus avellana HOM05D003978 ORTHO05D006033 3.1e-07 58.5 45 62.2
Ah.08g211530 Amaranthus hybridus HOM05D003978 ORTHO05D006033 4.1e-07 58.2 47 55.3
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 4.1e-07 58.2 45 62.2
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 5.4e-07 57.8 48 54.2
ATR0665G372 Amborella trichopoda HOM05D003978 ORTHO05D006033 7.0e-07 57.4 49 57.1
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 7.0e-07 57.4 48 54.2
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 1.2e-06 56.6 52 50.0
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 1.6e-06 56.2 48 54.2
A09p17400 Brassica napus HOM05D029713 ORTHO05D027326 2.7e-06 55.5 48 56.2
C01p37200 Brassica napus HOM05D003978 ORTHO05D006033 2.7e-06 55.5 45 57.8
Cfa017638 Carpinus fangiana HOM05D003978 ORTHO05D006033 2.7e-06 55.5 45 57.8
Haze_16751 Corylus avellana HOM05D003978 ORTHO05D006033 2.7e-06 55.5 44 59.1
Duzib106G0034 Durio zibethinus HOM05D001807 ORTHO05D002044 3.5e-06 55.1 35 65.7
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 4.5e-06 54.7 52 48.1


User provided reference genes

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