Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10242 Brassica carinata HOM05D000282 ORTHO05D013245 6.2e-51 203.8 98 100.0
C04p31170 Brassica napus HOM05D000282 ORTHO05D013245 6.5e-48 193.7 93 100.0
AL5G44050 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 6.7e-45 183.7 99 91.9
AT3G61650 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 6.7e-45 183.7 99 91.9
Carub.0005s2834 Capsella rubella HOM05D000282 ORTHO05D004791 6.7e-45 183.7 99 91.9
Thhalv10005943m.g Eutrema salsugineum HOM05D000282 ORTHO05D004791 1.1e-44 183.0 99 91.9
AL6G15510 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 1.5e-44 182.6 99 90.9
Carub.0006s0452 Capsella rubella HOM05D000282 ORTHO05D004791 1.5e-44 182.6 99 90.9
Aa31LG10G15630 Aethionema arabicum HOM05D000282 ORTHO05D004791 2.5e-44 181.8 99 90.9
BolC4t24670H Brassica oleracea HOM05D000282 ORTHO05D013245 2.5e-44 181.8 91 96.7
CARHR004860 Cardamine hirsuta HOM05D000282 ORTHO05D004791 2.5e-44 181.8 99 90.9
AT5G05620 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 4.3e-44 181.0 99 89.9
BcaB02g07362 Brassica carinata HOM05D000282 ORTHO05D004791 7.4e-44 180.3 99 90.9
Sp5g01760 Schrenkiella parvula HOM05D000282 ORTHO05D004791 7.4e-44 180.3 99 89.9
GSVIVG01027050001 Vitis vinifera HOM05D000282 ORTHO05D004791 4.8e-43 177.6 97 89.7
Cfa003833 Carpinus fangiana HOM05D000282 ORTHO05D004791 6.3e-43 177.2 97 89.7
Haze_15621 Corylus avellana HOM05D000282 ORTHO05D004791 6.3e-43 177.2 97 89.7
Hund27221 Selenicereus undatus HOM05D000282 ORTHO05D004791 8.2e-43 176.8 99 87.9
vmacro13149 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 1.1e-42 176.4 99 87.9
BcaC07g40674 Brassica carinata HOM05D000282 ORTHO05D004791 1.4e-42 176.0 99 89.9
A09p53710 Brassica napus HOM05D000282 ORTHO05D004791 1.4e-42 176.0 99 89.9
C08p36490 Brassica napus HOM05D000282 ORTHO05D004791 1.4e-42 176.0 99 89.9
BolC8t51232H Brassica oleracea HOM05D000282 ORTHO05D004791 1.4e-42 176.0 99 89.9
BraA09t40793Z Brassica rapa HOM05D000282 ORTHO05D004791 1.4e-42 176.0 99 89.9
Rhsim07G0006700 Rhododendron simsii HOM05D000282 ORTHO05D004791 1.8e-42 175.6 99 86.9
Hund16696 Selenicereus undatus HOM05D000282 ORTHO05D004791 1.8e-42 175.6 99 86.9
Sc01g0002960 Simmondsia chinensis HOM05D000282 ORTHO05D004791 1.8e-42 175.6 97 88.7
THA.LOC104817337 Tarenaya hassleriana HOM05D000282 ORTHO05D004791 1.8e-42 175.6 99 87.9
Manes.01G249000 Manihot esculenta HOM05D000282 ORTHO05D004791 2.4e-42 175.3 97 87.6
TWI81G0677 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 2.4e-42 175.3 99 86.9
Duzib133G0471 Durio zibethinus HOM05D000282 ORTHO05D004791 3.1e-42 174.9 97 88.7
Duzib138G0443 Durio zibethinus HOM05D000282 ORTHO05D004791 3.1e-42 174.9 97 88.7
Eucgr.E00075 Eucalyptus grandis HOM05D000282 ORTHO05D004791 3.1e-42 174.9 98 86.7
Gohir.A11G094800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 3.1e-42 174.9 96 89.6
Gohir.D11G099800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 3.1e-42 174.9 96 89.6
Gorai.007G106000 Gossypium raimondii HOM05D000282 ORTHO05D004791 3.1e-42 174.9 96 89.6
Sed0019380 Sechium edule HOM05D000282 ORTHO05D004791 3.1e-42 174.9 97 88.7
CSS0036656 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 4.1e-42 174.5 99 85.9
CiPaw.01G072200 Carya illinoinensis HOM05D000282 ORTHO05D004791 4.1e-42 174.5 96 88.5
Potri.014G094900 Populus trichocarpa HOM05D000282 ORTHO05D004791 4.1e-42 174.5 99 87.9
Cpa.g.sc194.8 Carica papaya HOM05D000282 ORTHO05D004791 5.3e-42 174.1 97 86.6
MELO3C006063.2 Cucumis melo HOM05D000282 ORTHO05D004791 5.3e-42 174.1 97 87.6
CsaV3_3G008430 Cucumis sativus L. HOM05D000282 ORTHO05D004791 5.3e-42 174.1 97 87.6
Ciclev10019995m.g Citrus clementina HOM05D000282 ORTHO05D004791 6.9e-42 173.7 97 87.6
Actinidia10105 Actinidia chinensis HOM05D000282 ORTHO05D004791 9.0e-42 173.3 96 87.5
CANSAT56G2763 Cannabis sativa HOM05D000282 ORTHO05D013245 9.0e-42 173.3 95 89.5
Thecc.01G347400 Theobroma cacao HOM05D000282 ORTHO05D004791 9.0e-42 173.3 97 87.6
Ah.05g179880 Amaranthus hybridus HOM05D000282 ORTHO05D004791 1.2e-41 172.9 97 86.6
ClCG05G001100 Citrullus lanatus HOM05D000282 ORTHO05D004791 1.2e-41 172.9 97 86.6
Dinv32555 Davidia involucrata HOM05D000282 ORTHO05D004791 1.2e-41 172.9 97 86.6
Hma1.2p1_0077F.1_g039810 Hydrangea macrophylla HOM05D000282 ORTHO05D004791 1.2e-41 172.9 97 86.6
Nn3g19105 Nelumbo nucifera HOM05D000282 ORTHO05D004791 1.2e-41 172.9 97 87.6
Potri.002G167800 Populus trichocarpa HOM05D000282 ORTHO05D004791 1.2e-41 172.9 99 86.9
TWI60G1292 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 1.2e-41 172.9 95 88.4
CSS0024011 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 1.5e-41 172.6 97 86.6
COL.COLO4_06331 Corchorus olitorius HOM05D000282 ORTHO05D004791 1.5e-41 172.6 97 87.6
LjContig00049g0003003 Lotus japonicus HOM05D000282 ORTHO05D004791 2.0e-41 172.2 95 88.4
QL04p058632 Quercus lobata HOM05D000282 ORTHO05D004791 2.0e-41 172.2 94 89.4
QL04p059427 Quercus lobata HOM05D000282 ORTHO05D004791 2.0e-41 172.2 94 89.4
vmacro13193 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 2.0e-41 172.2 95 88.4
Atru.chr5.622 Acer truncatum HOM05D000282 ORTHO05D004791 2.6e-41 171.8 96 86.5
EL10Ac1g00313 Beta vulgaris HOM05D000282 ORTHO05D004791 3.4e-41 171.4 97 85.6
AUR62004452 Chenopodium quinoa HOM05D000282 ORTHO05D004791 3.4e-41 171.4 97 85.6
AUR62023497 Chenopodium quinoa HOM05D000282 ORTHO05D004791 3.4e-41 171.4 97 85.6
Lj1g0019806 Lotus japonicus HOM05D000282 ORTHO05D004791 3.4e-41 171.4 96 86.5
MD07G1145100 Malus domestica HOM05D000282 ORTHO05D004791 3.4e-41 171.4 97 86.6
Manes.05G025900 Manihot esculenta HOM05D000282 ORTHO05D004791 3.4e-41 171.4 96 86.5
BcaB02g08149 Brassica carinata HOM05D000282 ORTHO05D013245 4.5e-41 171.0 99 88.9
Gohir.D12G114100 Gossypium hirsutum HOM05D000282 ORTHO05D004791 4.5e-41 171.0 96 87.5
Gorai.008G123600 Gossypium raimondii HOM05D000282 ORTHO05D004791 4.5e-41 171.0 96 87.5
Rhsim01G0169600 Rhododendron simsii HOM05D000282 ORTHO05D004791 5.9e-41 170.6 99 85.9
Ca_09494_v3 Cicer arietinum L. HOM05D000282 ORTHO05D004791 1.0e-40 169.9 95 86.3
MD01G1076100 Malus domestica HOM05D000282 ORTHO05D004791 1.0e-40 169.9 97 85.6
ATR1100G023 Amborella trichopoda HOM05D000282 ORTHO05D004791 1.3e-40 169.5 96 85.4
Gohir.A12G110800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 1.3e-40 169.5 96 86.5
MBI07_g20449_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.3e-40 169.5 97 85.6
Medtr7g117050 Medicago truncatula HOM05D000282 ORTHO05D004791 2.2e-40 168.7 95 85.3
PSO384G3855 Papaver somniferum HOM05D000282 ORTHO05D004791 2.2e-40 168.7 95 85.3
PSO713G0028 Papaver somniferum HOM05D000282 ORTHO05D004791 2.2e-40 168.7 95 85.3
Nitab4.5_0004750g0010 Nicotiana tabacum HOM05D000282 ORTHO05D004791 2.9e-40 168.3 99 82.8
Prupe.2G100900 Prunus persica HOM05D000282 ORTHO05D004791 2.9e-40 168.3 97 84.5
Prupe.8G052800 Prunus persica HOM05D000282 ORTHO05D004791 2.9e-40 168.3 97 84.5
vmacro22518 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 2.9e-40 168.3 95 85.3
Prupe.1G559600 Prunus persica HOM05D000282 ORTHO05D004791 3.8e-40 167.9 99 82.8
TPR.G4706 Trifolium pratense HOM05D000282 ORTHO05D004791 3.8e-40 167.9 95 84.2
Cc04_g10460 Coffea canephora HOM05D000282 ORTHO05D004791 5.0e-40 167.5 97 83.5
SGA_v2.0_scaffold48G17909 Striga asiatica HOM05D000282 ORTHO05D004791 6.5e-40 167.2 99 82.8
TAR375G0782 Trochodendron aralioides HOM05D000282 ORTHO05D004791 6.5e-40 167.2 96 84.4
FvH4_7g15920 Fragaria vesca HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN01G1869 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN03G1170 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN06G3555 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN06G5129 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN10G2511 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
FAN10G4217 Fragaria x ananassa HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
Nn1g01799 Nelumbo nucifera HOM05D000282 ORTHO05D004791 8.5e-40 166.8 96 84.4
RcHm_v2.0_Chr1g0358791 Rosa chinensis HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 83.5
SalBow3G2106 Salvia bowleyana HOM05D000282 ORTHO05D004791 8.5e-40 166.8 97 82.5
ATR0069G056 Amborella trichopoda HOM05D000282 ORTHO05D004791 1.4e-39 166.0 95 85.3
CAN.G352.6 Capsicum annuum HOM05D000282 ORTHO05D004791 1.4e-39 166.0 99 80.8
Lalb_Chr04g0261761 Lupinus albus HOM05D000282 ORTHO05D004791 1.4e-39 166.0 95 84.2
Sopen03g030510 Solanum pennellii HOM05D000282 ORTHO05D004791 1.4e-39 166.0 99 80.8
PGSC0003DMG400015180 Solanum tuberosum HOM05D000282 ORTHO05D004791 1.4e-39 166.0 99 80.8
Peaxi162Scf00089g00639 Petunia axillaris HOM05D000282 ORTHO05D004791 1.9e-39 165.6 99 81.8
Aqoxy7G00158 Aquilegia oxysepala HOM05D000282 ORTHO05D004791 2.5e-39 165.2 97 84.5
Oeu045482.2 Olea europaea HOM05D000282 ORTHO05D004791 2.5e-39 165.2 99 80.8
TAR636G2021 Trochodendron aralioides HOM05D000282 ORTHO05D004791 4.2e-39 164.5 96 83.3
Psat3g003120 Pisum sativum HOM05D000282 ORTHO05D004791 5.5e-39 164.1 95 83.2
Solyc03g111380.3 Solanum lycopersicum HOM05D000282 ORTHO05D004791 5.5e-39 164.1 99 79.8
Migut.G00954 Erythranthe guttata HOM05D000282 ORTHO05D004791 9.4e-39 163.3 95 84.2
HanXRQChr15g0472351 Helianthus annuus HOM05D000282 ORTHO05D004791 9.4e-39 163.3 97 82.5
Nitab4.5_0002855g0020 Nicotiana tabacum HOM05D000282 ORTHO05D004791 9.4e-39 163.3 97 79.4
HanXRQChr04g0120991 Helianthus annuus HOM05D000282 ORTHO05D004791 1.2e-38 162.9 99 80.8
Lj2C48T5 Lonicera japonica HOM05D000282 ORTHO05D004791 2.1e-38 162.2 97 80.4
VMungo0540G0505 Vigna mungo HOM05D000282 ORTHO05D004791 3.6e-38 161.4 94 84.0
CDE02G4105 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 4.6e-38 161.0 99 78.8
MBI06_g32762_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 6.1e-38 160.6 99 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3904 Anthoceros agrestis HOM05D000282 ORTHO05D004791 7.9e-38 160.2 96 77.1
Glyma.19G253300 Glycine max HOM05D000282 ORTHO05D004791 7.9e-38 160.2 94 83.0
CDE09G0145 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 1.0e-37 159.8 99 77.8
Glyma.03G255800 Glycine max HOM05D000282 ORTHO05D004791 1.0e-37 159.8 95 83.2
Psat0s1524g0080 Pisum sativum HOM05D000282 ORTHO05D013245 1.8e-37 159.1 93 81.7
HPP92_012797 Vanilla planifolia HOM05D000282 ORTHO05D004791 1.8e-37 159.1 99 78.8
Lsat_1_v5_gn_7_1921 Lactuca sativa HOM05D000282 ORTHO05D004791 2.3e-37 158.7 99 78.8
Lj9A592T68 Lonicera japonica HOM05D000282 ORTHO05D004791 3.9e-37 157.9 97 79.4
Pp3c22_2850 Physcomitrium patens HOM05D000282 ORTHO05D004791 3.9e-37 157.9 96 78.1
Mapoly0046s0055 Marchantia polymorpha HOM05D000282 ORTHO05D004791 8.8e-37 156.8 95 77.9
Pp3c19_7110 Physcomitrium patens HOM05D000282 ORTHO05D004791 8.8e-37 156.8 96 77.1
Sabra14G0069500 Salix brachista HOM05D000282 ORTHO05D004791 8.8e-37 156.8 134 64.9
Nitab4.5_0003282g0050 Nicotiana tabacum HOM05D000282 ORTHO05D004791 1.5e-36 156.0 90 84.4
ECA236G0122 Erigeron canadensis HOM05D000282 ORTHO05D004791 2.0e-36 155.6 99 76.8
DCAR_006965 Daucus carota HOM05D000282 ORTHO05D004791 3.3e-36 154.8 95 78.9
Phvul.006G110500 Phaseolus vulgaris HOM05D000282 ORTHO05D004791 7.4e-36 153.7 94 79.8
Zm00001eb345620 Zea mays HOM05D000282 ORTHO05D004791 7.4e-36 153.7 92 81.5
Os05g0156600 Oryza sativa ssp. japonica HOM05D000282 ORTHO05D004791 9.7e-36 153.3 92 80.4
CiPaw.02G038600 Carya illinoinensis HOM05D000282 ORTHO05D004791 2.2e-35 152.1 77 93.5
Zm00001eb282650 Zea mays HOM05D000282 ORTHO05D004791 2.2e-35 152.1 92 80.4
Lj7C504T3 Lonicera japonica HOM05D000282 ORTHO05D004791 4.8e-35 151.0 97 77.3
arahy.Tifrunner.gnm1.ann1.GE9U5Y Arachis hypogaea HOM05D000282 ORTHO05D004791 8.2e-35 150.2 89 79.8
arahy.Tifrunner.gnm1.ann1.LPHW23 Arachis hypogaea HOM05D000282 ORTHO05D004791 8.2e-35 150.2 89 79.8
arahy.Tifrunner.gnm1.ann1.ZP6T3L Arachis hypogaea HOM05D000282 ORTHO05D004791 8.2e-35 150.2 89 79.8
SHI16878 Sapria himalayana HOM05D000282 ORTHO05D004791 5.3e-34 147.5 77 90.9
SMO118G0144 Selaginella moellendorffii HOM05D000282 ORTHO05D004791 9.1e-34 146.7 97 73.2
unitig_8.g4945 Utricularia gibba HOM05D000282 ORTHO05D004791 1.2e-33 146.4 86 83.7
Lsat_1_v5_gn_5_84941 Lactuca sativa HOM05D000282 ORTHO05D004791 2.6e-33 145.2 94 74.5
arahy.Tifrunner.gnm1.ann1.7V87L9 Arachis hypogaea HOM05D000282 ORTHO05D004791 4.5e-33 144.4 89 77.5
MBI07_g09923_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.3e-32 142.9 140 57.9
HanXRQChr17g0562591 Helianthus annuus HOM05D000282 ORTHO05D004791 2.7e-30 135.2 98 67.3
A04p00980 Brassica napus HOM05D000282 ORTHO05D013245 3.9e-29 131.3 97 72.2
Nitab4.5_0002062g0030 Nicotiana tabacum HOM05D000282 ORTHO05D004791 7.4e-28 127.1 76 77.6
CBR_g39634 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-27 125.6 76 77.6
DCAR_016073 Daucus carota HOM05D000282 ORTHO05D013245 4.1e-26 121.3 99 64.6
arahy.Tifrunner.gnm1.ann1.HP7BC0 Arachis hypogaea HOM05D000282 ORTHO05D004791 3.5e-25 118.2 64 87.5
MCO13G304 Micromonas commoda HOM05D000282 ORTHO05D004791 7.7e-25 117.1 93 59.1
PRCOL_00004163 Prasinoderma coloniale HOM05D000282 ORTHO05D004791 1.0e-24 116.7 88 65.9
BcaC02g10243 Brassica carinata HOM05D000282 ORTHO05D013245 2.2e-24 115.5 54 100.0
PGR031G0774 Punica granatum HOM05D000282 ORTHO05D004791 2.6e-20 102.1 93 60.2
DCAR_016076 Daucus carota HOM05D000282 ORTHO05D013245 3.3e-20 101.7 99 56.6
Lj4A906T36 Lonicera japonica HOM05D000282 ORTHO05D013245 8.5e-16 87.0 74 59.5
Lj8A41T51 Lonicera japonica HOM05D000282 ORTHO05D013245 1.5e-15 86.3 89 50.6
MBI19_g10806_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.6e-14 82.8 56 69.6
Cfa025047 Carpinus fangiana HOM05D000282 ORTHO05D004791 3.0e-13 78.6 71 50.7
Cre06.g299300 Chlamydomonas reinhardtii HOM05D000282 ORTHO05D004791 5.2e-13 77.8 82 48.8
Haze_27518 Corylus avellana HOM05D000282 ORTHO05D004791 8.3e-11 70.5 71 45.1
MBI19_g33012_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 3.8e-08 61.6 33 87.9
Lj5A750G49 Lonicera japonica HOM05D000282 ORTHO05D013245 5.5e-07 57.8 35 74.3


User provided reference genes

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