Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 0.0e+00 1111.3 574 100.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 0.0e+00 1111.3 574 100.0
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 0.0e+00 1108.2 574 99.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-306 1055.4 574 95.3
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.8e-306 1053.5 574 95.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-294 1015.8 583 92.6
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.0e-279 963.8 600 84.7
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.0e-279 963.8 600 84.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.5e-271 937.9 589 84.9
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-267 926.4 586 84.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.7e-265 919.1 615 78.4
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 5.5e-264 914.1 605 78.7
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.5e-264 914.1 597 81.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.2e-263 912.9 616 77.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-255 885.9 588 82.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.0e-238 828.6 605 73.4
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-236 823.2 588 76.9
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.9e-224 782.7 617 69.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.4e-214 750.0 590 67.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.5e-200 702.6 619 62.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.6e-197 692.6 642 60.0
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.1e-195 687.2 608 62.2
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.2e-194 683.7 637 59.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.1e-194 682.9 620 59.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 3.0e-193 679.1 612 59.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.1e-192 677.2 626 60.2
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.1e-191 672.9 622 57.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 4.7e-191 671.8 626 58.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 8.1e-191 671.0 621 58.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.2e-188 662.9 591 62.1
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.4e-187 660.2 620 56.9
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.4e-187 659.4 627 58.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.1e-187 657.9 585 63.8
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.5e-186 655.6 621 59.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 3.5e-186 655.6 625 58.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.0e-185 654.1 616 59.4
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.0e-185 654.1 622 58.5
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.0e-185 652.5 632 57.4
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.6e-184 647.5 615 57.9
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 4.8e-183 645.2 611 57.8
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 8.1e-183 644.4 632 55.5
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 8.1e-183 644.4 627 57.4
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-182 644.0 615 57.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-182 644.0 616 57.8
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.1e-182 644.0 628 56.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.0e-182 642.1 633 56.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.0e-182 642.1 620 58.4
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 6.9e-182 641.3 618 59.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 9.0e-182 641.0 616 57.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 9.0e-182 641.0 588 60.0
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 3.4e-181 639.0 627 57.1
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.4e-181 639.0 622 58.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.5e-181 638.6 616 57.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 9.9e-181 637.5 604 58.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.3e-180 637.1 595 57.8
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.8e-180 635.6 600 58.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 6.4e-180 634.8 603 57.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.1e-179 634.0 630 57.5
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.1e-179 634.0 619 57.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-179 633.6 604 57.0
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.2e-178 630.6 593 57.5
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.5e-178 629.0 602 58.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.0e-177 627.5 601 57.9
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 6.7e-177 624.8 605 56.7
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 6.7e-177 624.8 619 55.7
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 8.7e-177 624.4 613 56.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.5e-176 622.9 597 57.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 9.6e-176 620.9 609 57.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.8e-175 619.4 608 57.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.8e-175 618.6 598 57.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.1e-174 617.5 597 57.1
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.4e-174 617.1 598 57.5
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.1e-174 615.9 624 56.6
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.0e-174 615.5 635 54.8
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.2e-173 614.0 609 56.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-173 613.6 608 56.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.5e-173 613.6 631 54.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.5e-173 613.6 618 55.8
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.5e-173 613.6 635 53.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.0e-173 613.2 600 56.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.6e-173 612.8 633 55.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 7.6e-173 611.3 634 53.9
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.2e-172 609.8 608 54.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.8e-172 609.0 612 56.7
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.4e-172 608.2 598 56.4
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.4e-172 607.8 577 57.9
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.9e-171 606.7 600 55.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.9e-171 606.7 595 56.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.2e-171 605.9 637 54.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.5e-171 605.1 633 54.7
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 5.5e-171 605.1 614 55.7
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.2e-170 604.0 627 55.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.6e-170 603.6 609 55.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.0e-170 601.7 644 53.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 6.0e-170 601.7 575 57.9
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.0e-169 600.9 579 57.3
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.0e-169 599.4 598 55.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.7e-169 598.2 623 55.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.5e-168 596.3 637 53.4
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.6e-167 593.6 590 55.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.8e-167 592.0 630 54.1
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 9.3e-163 577.8 633 53.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-162 577.4 546 58.4
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.3e-161 573.9 392 79.8
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 8.7e-161 571.2 628 51.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-160 570.5 478 66.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.5e-160 569.7 505 60.6
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 6.1e-154 548.5 624 51.6
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 3.7e-143 512.7 527 54.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.1e-142 509.6 567 50.8
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 6.9e-142 508.4 634 46.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.5e-140 501.9 588 49.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.0e-136 490.3 573 49.7
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.3e-134 482.3 492 55.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.7e-132 477.2 549 51.9
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.0e-132 475.7 567 49.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.0e-128 463.8 672 43.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 6.8e-121 438.7 265 86.4
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.2e-112 411.4 636 43.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.7e-111 406.4 350 68.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 6.3e-111 405.6 498 49.6
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 8.3e-111 405.2 350 68.0
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.3e-108 397.9 241 88.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.8e-108 396.4 439 57.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.0e-105 386.3 484 51.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 5.7e-104 382.5 506 48.2
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 9.8e-104 381.7 651 40.2
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.4e-97 361.3 401 52.4
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 4.0e-97 359.8 397 53.1
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.8e-89 334.3 645 37.7
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.8e-88 329.3 569 38.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.1e-82 310.8 256 60.9
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.8e-79 300.1 146 97.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-74 284.6 232 73.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 9.0e-73 278.9 416 44.5
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-72 278.1 156 92.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-70 271.6 332 50.0
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-70 271.6 332 50.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.7e-69 267.3 238 58.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 6.0e-69 266.2 544 35.8
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.9e-57 226.1 770 27.5
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 9.9e-56 222.2 205 58.0
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.5e-47 193.0 542 31.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 9.0e-41 172.6 502 29.3
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 6.1e-37 159.8 551 28.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.1e-35 155.6 307 36.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.5e-32 145.2 182 45.6
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.3e-18 99.0 232 33.2
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.2e-18 98.2 83 56.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.7e-18 97.4 60 76.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.4e-17 95.5 91 58.2
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-09 68.9 85 50.6
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 4.5e-08 63.9 73 50.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 4.2e-06 57.4 43 62.8


User provided reference genes

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