Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 1.7e-54 215.7 105 100.0
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 1.7e-54 215.7 105 100.0
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 1.7e-54 215.7 105 100.0
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 7.2e-53 210.3 104 97.1
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 2.7e-52 208.4 104 96.2
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 8.7e-51 203.4 104 95.2
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 7.7e-47 190.3 98 92.9
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 3.3e-42 174.9 103 81.6
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 9.7e-42 173.3 103 82.5
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 9.7e-42 173.3 99 84.8
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 9.7e-42 173.3 99 84.8
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 9.7e-42 173.3 99 84.8
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 1.3e-41 172.9 104 79.8
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 2.8e-41 171.8 99 83.8
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 2.8e-41 171.8 99 83.8
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.8e-41 171.8 104 77.9
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 3.7e-41 171.4 104 77.9
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 4.5e-39 164.5 103 75.7
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 5.9e-39 164.1 104 75.0
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.0e-38 163.3 104 73.1
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.3e-38 162.9 104 73.1
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.2e-38 162.2 104 73.1
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.2e-38 162.2 104 73.1
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.9e-38 161.8 104 72.1
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 3.8e-38 161.4 104 72.1
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 3.8e-38 161.4 104 73.1
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 3.8e-38 161.4 104 72.1
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 5.0e-38 161.0 104 72.1
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 8.5e-38 160.2 104 71.2
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 8.5e-38 160.2 104 71.2
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 8.5e-38 160.2 104 71.2
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.1e-37 159.8 104 71.2
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.1e-37 159.8 104 71.2
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.4e-37 159.5 104 72.1
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.4e-37 159.5 104 71.2
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 1.4e-37 159.5 104 70.2
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 1.4e-37 159.5 104 71.2
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.9e-37 159.1 104 72.1
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 1.9e-37 159.1 104 70.2
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 2.5e-37 158.7 104 70.2
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 2.5e-37 158.7 104 70.2
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 2.5e-37 158.7 104 70.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 2.5e-37 158.7 104 70.2
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.5e-37 158.7 104 72.1
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.2e-37 158.3 104 72.1
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.2e-37 158.3 104 72.1
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 3.2e-37 158.3 104 70.2
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.2e-37 158.3 104 70.2
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 3.2e-37 158.3 104 70.2
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.2e-37 157.9 104 71.2
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 5.5e-37 157.5 104 69.2
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 5.5e-37 157.5 104 71.2
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 5.5e-37 157.5 104 71.2
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 5.5e-37 157.5 104 72.1
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 7.2e-37 157.1 104 71.2
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 7.2e-37 157.1 104 71.2
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 7.2e-37 157.1 101 71.3
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 7.2e-37 157.1 104 71.2
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 7.2e-37 157.1 104 70.2
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 9.4e-37 156.8 104 71.2
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 9.4e-37 156.8 104 71.2
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 9.4e-37 156.8 104 71.2
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 9.4e-37 156.8 104 69.2
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.2e-36 156.4 104 70.2
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 1.2e-36 156.4 99 72.7
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.6e-36 156.0 104 68.3
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.6e-36 156.0 104 65.4
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 1.6e-36 156.0 104 69.2
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.1e-36 155.6 104 68.3
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 2.7e-36 155.2 104 69.2
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.7e-36 155.2 103 70.9
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 3.6e-36 154.8 104 68.3
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 3.6e-36 154.8 104 69.2
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 3.6e-36 154.8 104 70.2
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 4.7e-36 154.5 104 67.3
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 7.9e-36 153.7 101 72.3
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 7.9e-36 153.7 104 67.3
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 7.9e-36 153.7 105 69.5
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.0e-35 153.3 104 68.3
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 1.0e-35 153.3 104 67.3
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 66.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 69.2
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 69.2
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 69.2
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 69.2
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.4e-35 152.9 104 65.4
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 1.8e-35 152.5 104 69.2
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.8e-35 152.5 104 68.3
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.8e-35 152.5 104 70.2
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 3.0e-35 151.8 104 68.3
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 3.0e-35 151.8 104 66.3
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 3.0e-35 151.8 104 66.3
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 3.0e-35 151.8 105 68.6
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 8.8e-35 150.2 104 67.3
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 8.8e-35 150.2 104 66.3
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 8.8e-35 150.2 104 66.3
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.5e-34 149.4 104 63.5
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 1.5e-34 149.4 104 68.3
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.0e-34 149.1 104 65.4
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 2.0e-34 149.1 104 65.4
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 2.6e-34 148.7 104 66.3
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.4e-34 147.9 104 67.3
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 4.4e-34 147.9 104 68.3
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 5.7e-34 147.5 104 67.3
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 9.7e-34 146.7 104 64.4
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 9.7e-34 146.7 104 64.4
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.7e-33 146.0 92 72.8
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 1.7e-33 146.0 104 68.3
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.8e-33 145.2 90 72.2
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.8e-33 145.2 104 61.5
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 3.7e-33 144.8 99 68.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 8.2e-33 143.7 99 69.7
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 1.4e-32 142.9 104 66.3
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.4e-32 142.9 104 61.5
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.8e-32 142.5 103 65.0
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.4e-32 142.1 104 64.4
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 3.1e-32 141.7 101 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 4.1e-32 141.4 104 61.5
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 9.1e-32 140.2 104 62.5
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 9.1e-32 140.2 104 62.5
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 9.1e-32 140.2 104 62.5
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 1.2e-31 139.8 99 64.6
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 5.9e-31 137.5 104 61.5
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 1.3e-30 136.3 79 84.8
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 1.7e-30 136.0 94 67.0
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 2.2e-30 135.6 100 62.0
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 3.8e-30 134.8 104 57.7
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 1.1e-29 133.3 100 62.0
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.9e-29 132.5 104 57.7
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.9e-29 132.5 104 57.7
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.5e-29 132.1 99 61.6
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 3.2e-29 131.7 104 62.5
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 5.5e-29 131.0 105 61.9
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-28 129.8 98 60.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.2e-28 129.8 100 60.0
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 2.1e-28 129.0 104 56.7
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 2.7e-28 128.6 104 59.6
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 4.7e-28 127.9 98 59.2
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 4.7e-28 127.9 98 59.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 4.7e-28 127.9 98 59.2
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 8.0e-28 127.1 104 51.9
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 1.8e-27 125.9 92 59.8
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 3.0e-27 125.2 79 72.2
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 4.0e-27 124.8 98 57.1
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 5.2e-27 124.4 97 55.7
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 8.8e-27 123.6 104 53.8
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 4.5e-23 111.3 100 55.0
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 5.0e-22 107.8 104 60.6
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 5.0e-22 107.8 104 51.9
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 3.6e-20 101.7 103 43.7
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 7.7e-07 57.4 37 70.3
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 7.7e-07 57.4 77 41.6


User provided reference genes

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