Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 5.5e-150 534.3 267 100.0
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 3.5e-136 488.4 257 95.3
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 1.6e-112 409.8 247 85.0
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 1.6e-112 409.8 247 85.0
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-109 400.2 204 96.1
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 1.2e-109 400.2 204 96.1
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-107 393.3 203 96.1
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 4.4e-107 391.7 205 96.1
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 7.2e-41 171.8 170 51.8
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 1.7e-37 160.6 97 82.5
Nn2g15287 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.4e-36 157.5 100 79.0
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 6.9e-36 155.2 154 53.9
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 3.9e-31 139.4 171 50.3
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 3.9e-31 139.4 148 47.3
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 3.9e-31 139.4 128 53.1
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.5e-30 137.5 137 54.0
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 7.4e-30 135.2 104 63.5
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 2.8e-29 133.3 136 50.7
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 1.8e-28 130.6 91 71.4
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 2.4e-28 130.2 93 71.0
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 7.0e-28 128.6 93 72.0
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.6e-27 127.5 102 62.7
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 5.9e-27 125.6 90 71.1
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.0e-26 124.8 104 55.8
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 6.5e-26 122.1 161 41.6
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 6.5e-26 122.1 137 48.9
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 1.5e-25 120.9 95 66.3
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-25 120.9 95 66.3
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.5e-25 120.9 93 66.7
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 4.2e-25 119.4 124 52.4
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 1.6e-24 117.5 91 70.3
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 1.6e-24 117.5 160 43.8
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 1.6e-24 117.5 129 46.5
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 6.1e-24 115.5 80 71.2
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 6.1e-24 115.5 80 71.2
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 6.1e-24 115.5 100 54.0
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 8.0e-24 115.2 112 50.0
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.0e-23 114.8 118 50.0
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.3e-23 113.6 93 63.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 3.0e-23 113.2 80 70.0
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 8.8e-23 111.7 89 64.0
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 1.5e-22 110.9 92 58.7
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 2.0e-22 110.5 155 44.5
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 2.0e-22 110.5 118 48.3
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 3.3e-22 109.8 118 49.2
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 3.3e-22 109.8 102 56.9
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 9.7e-22 108.2 110 53.6
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 9.7e-22 108.2 113 48.7
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.1e-20 104.8 103 52.4
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.4e-20 104.4 102 51.0
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 2.4e-20 103.6 101 58.4
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 3.1e-20 103.2 88 62.5
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 5.3e-20 102.4 103 51.5
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 7.0e-20 102.1 102 52.9
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 7.0e-20 102.1 102 52.0
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 7.0e-20 102.1 102 52.0
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 7.0e-20 102.1 102 52.0
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 7.0e-20 102.1 102 52.0
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 9.1e-20 101.7 102 53.9
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.2e-19 101.3 103 50.5
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 2.0e-19 100.5 102 52.0
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 3.5e-19 99.8 102 52.0
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 3.5e-19 99.8 102 52.0
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.5e-19 99.4 102 51.0
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 5.9e-19 99.0 102 52.0
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 5.9e-19 99.0 102 52.0
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 7.7e-19 98.6 102 52.0
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 7.7e-19 98.6 113 51.3
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 7.7e-19 98.6 102 51.0
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.0e-18 98.2 102 50.0
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.0e-18 98.2 102 51.0
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 1.3e-18 97.8 104 50.0
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.3e-18 97.8 104 50.0
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.3e-18 97.8 102 51.0
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 1.3e-18 97.8 102 51.0
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.3e-18 97.8 102 51.0
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 1.3e-18 97.8 106 50.9
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.7e-18 97.4 102 51.0
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 2.2e-18 97.1 102 50.0
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 2.2e-18 97.1 102 50.0
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 2.2e-18 97.1 102 50.0
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 2.2e-18 97.1 102 50.0
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 2.9e-18 96.7 101 51.5
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.9e-18 96.7 106 47.2
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.9e-18 96.7 102 49.0
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.9e-18 96.7 102 51.0
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 2.9e-18 96.7 88 51.1
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.8e-18 96.3 101 50.5
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.8e-18 96.3 101 50.5
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 3.8e-18 96.3 101 50.5
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 3.8e-18 96.3 101 48.5
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 5.0e-18 95.9 102 50.0
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 5.0e-18 95.9 102 49.0
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 5.0e-18 95.9 102 49.0
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 5.0e-18 95.9 102 49.0
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 6.5e-18 95.5 102 48.0
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 8.5e-18 95.1 102 49.0
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 1.1e-17 94.7 102 50.0
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.1e-17 94.7 102 50.0
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.1e-17 94.7 101 48.5
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.1e-17 94.7 101 48.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.1e-17 94.7 100 49.0
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 1.5e-17 94.4 102 48.0
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.5e-17 94.4 102 49.0
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.5e-17 93.6 102 47.1
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 3.2e-17 93.2 103 48.5
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 3.2e-17 93.2 103 48.5
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.2e-17 93.2 101 47.5
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 4.2e-17 92.8 102 47.1
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 7.2e-17 92.0 101 47.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.2e-17 92.0 103 47.6
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 7.2e-17 92.0 102 48.0
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 7.2e-17 92.0 102 47.1
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 7.2e-17 92.0 102 49.0
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 9.4e-17 91.7 102 47.1
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 9.4e-17 91.7 100 47.0
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.2e-16 91.3 102 49.0
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-16 91.3 102 49.0
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-16 91.3 102 49.0
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-16 91.3 102 49.0
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.6e-16 90.9 102 48.0
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 1.6e-16 90.9 102 48.0
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 2.1e-16 90.5 102 48.0
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 2.7e-16 90.1 98 46.9
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 2.7e-16 90.1 100 47.0
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 3.6e-16 89.7 102 46.1
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 4.7e-16 89.4 102 47.1
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 4.7e-16 89.4 102 47.1
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 4.7e-16 89.4 100 48.0
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 4.7e-16 89.4 101 47.5
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 6.1e-16 89.0 102 47.1
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 6.1e-16 89.0 102 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 8.0e-16 88.6 102 45.1
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 8.0e-16 88.6 102 47.1
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.0e-15 88.2 155 37.4
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 2.3e-15 87.0 101 41.6
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.3e-15 87.0 102 45.1
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.3e-15 87.0 101 46.5
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.0e-15 86.7 102 46.1
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.0e-15 86.7 102 46.1
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.0e-15 86.7 102 46.1
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 5.2e-15 85.9 101 46.5
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.2e-14 84.7 100 43.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.2e-14 84.7 103 43.7
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.6e-14 83.6 100 44.0
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 4.4e-14 82.8 102 45.1
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 7.5e-14 82.0 69 55.1
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.2e-13 80.5 100 42.0
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 2.8e-13 80.1 86 47.7
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 2.4e-12 77.0 47 83.0
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 5.4e-12 75.9 68 55.9
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 5.4e-12 75.9 68 55.9
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 1.5e-09 67.8 71 53.5
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 2.1e-08 63.9 82 40.2
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 5.7e-06 55.8 92 38.0


User provided reference genes

Program Settings