Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-226 789.6 386 100.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 4.3e-103 379.0 353 60.9
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 9.9e-92 341.3 392 53.1
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-91 340.9 278 66.9
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-91 340.5 278 66.9
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-90 337.8 278 66.2
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 7.1e-90 335.1 279 65.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.1e-89 333.6 279 65.9
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-89 332.4 278 65.8
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-89 332.4 278 65.8
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-89 332.4 278 65.8
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 7.8e-89 331.6 213 79.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-88 330.9 293 63.1
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.3e-88 330.1 213 79.3
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.9e-88 329.3 281 65.5
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 4.6e-81 305.8 180 86.7
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-74 282.7 210 68.1
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-71 273.9 204 68.6
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-71 273.9 211 66.4
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-71 273.9 211 66.4
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.9e-71 273.9 261 60.2
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-71 273.9 261 60.5
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 7.4e-71 271.9 204 68.1
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 9.6e-71 271.6 219 68.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 9.6e-71 271.6 219 68.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 9.6e-71 271.6 219 68.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 9.6e-71 271.6 219 68.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 9.6e-71 271.6 219 68.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.3e-70 271.2 265 58.1
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.8e-70 270.0 257 59.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-70 269.6 261 60.2
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-70 269.6 264 59.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.1e-69 268.1 263 58.2
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-69 268.1 264 59.1
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-69 267.7 218 66.5
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.8e-69 267.3 263 58.2
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.4e-69 266.9 218 67.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 4.0e-69 266.2 264 58.7
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-68 263.8 261 58.6
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 3.4e-68 263.1 268 54.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 7.6e-68 261.9 261 58.2
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 3.8e-67 259.6 258 55.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.4e-66 257.7 249 55.4
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.9e-66 257.3 264 54.9
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.9e-66 257.3 258 55.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.9e-66 257.3 258 55.0
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.4e-66 256.9 264 54.5
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.2e-66 256.5 220 62.3
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 3.2e-66 256.5 220 62.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-66 256.1 220 65.9
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.2e-66 256.1 191 68.6
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 5.5e-66 255.8 278 51.1
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.5e-66 255.8 258 55.8
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 5.5e-66 255.8 261 54.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 9.3e-66 255.0 256 55.5
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.2e-65 254.6 205 63.9
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 1.2e-65 254.6 270 53.7
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.2e-65 254.6 220 62.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.1e-65 253.8 262 54.6
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.7e-65 253.4 258 53.5
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.7e-65 253.4 317 49.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.7e-65 253.4 262 53.8
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.7e-65 253.4 220 61.8
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.7e-65 253.4 220 61.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 3.5e-65 253.1 264 54.5
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.5e-65 253.1 220 60.9
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.6e-65 252.7 204 64.2
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 6.0e-65 252.3 256 55.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 6.0e-65 252.3 220 61.8
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.0e-64 251.5 242 57.4
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.0e-64 251.5 219 63.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.0e-64 251.5 220 61.8
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.3e-64 251.1 220 61.4
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-64 250.8 220 60.9
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-64 250.8 220 60.9
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 1.8e-64 250.8 269 53.2
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.3e-64 250.4 258 54.3
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.3e-64 250.4 242 56.6
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.3e-64 250.4 220 60.9
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.3e-64 250.4 220 60.9
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 2.3e-64 250.4 220 60.9
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.3e-64 250.4 220 60.0
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.9e-64 249.6 290 50.3
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 3.9e-64 249.6 220 61.4
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 8.7e-64 248.4 220 61.4
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 8.7e-64 248.4 220 60.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 8.7e-64 248.4 264 52.7
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 8.7e-64 248.4 270 51.5
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.1e-63 248.1 204 63.7
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.1e-63 248.1 312 48.7
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.1e-63 248.1 220 58.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.1e-63 248.1 220 58.6
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.5e-63 247.7 220 60.9
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.5e-63 247.7 258 51.6
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.9e-63 247.3 256 53.9
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.3e-63 246.5 264 52.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 4.3e-63 246.1 220 60.5
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 5.6e-63 245.7 220 59.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 5.6e-63 245.7 203 63.5
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.6e-63 245.7 206 62.6
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 7.4e-63 245.4 256 53.9
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 9.6e-63 245.0 220 60.0
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 9.6e-63 245.0 220 59.1
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.3e-62 244.6 220 59.5
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.3e-62 244.6 206 62.6
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.6e-62 244.2 258 53.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.6e-62 244.2 258 53.5
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.6e-62 244.2 204 60.8
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.8e-62 243.4 204 61.3
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 3.7e-62 243.0 202 60.9
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.8e-62 242.7 204 61.8
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.8e-62 242.7 231 56.7
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 8.2e-62 241.9 220 59.5
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.2e-62 241.9 220 59.5
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 8.2e-62 241.9 230 57.0
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.1e-61 241.5 218 60.1
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.4e-61 241.1 217 57.6
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.4e-61 241.1 203 61.1
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.4e-61 241.1 220 58.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.8e-61 240.7 220 59.5
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.1e-61 240.0 220 59.1
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 3.1e-61 240.0 202 60.4
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 4.0e-61 239.6 238 57.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.3e-61 239.2 203 62.1
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.2e-60 238.0 202 61.9
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.0e-60 237.3 201 60.7
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.6e-60 236.9 201 60.2
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 5.8e-60 235.7 221 57.5
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.3e-59 234.6 203 60.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 3.2e-58 229.9 201 58.2
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 5.5e-58 229.2 228 55.3
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 7.1e-58 228.8 201 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 2.7e-57 226.9 202 57.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 7.9e-57 225.3 203 54.7
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.0e-56 224.9 201 56.7
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.0e-56 224.9 192 63.0
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 1.3e-56 224.6 201 58.2
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.8e-56 224.2 194 60.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.9e-56 223.0 206 56.8
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 8.7e-56 221.9 233 54.1
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-55 220.7 256 53.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.9e-55 220.7 248 49.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.5e-55 220.3 201 59.2
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 9.7e-55 218.4 278 48.6
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.3e-54 218.0 220 51.4
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.8e-54 216.9 203 53.2
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 8.2e-54 215.3 203 54.2
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-52 211.1 198 59.1
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-49 201.4 157 63.7
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 3.6e-49 199.9 274 45.6
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.3e-47 193.0 133 69.2
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.8e-45 187.6 264 42.8
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 9.1e-45 185.3 260 43.8
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 3.8e-43 179.9 281 40.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.6e-39 167.2 132 59.1
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.7e-38 163.3 202 45.5
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.0e-35 155.2 139 56.1
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.7e-35 154.5 216 42.1
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.2e-35 154.1 153 52.9
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.2e-34 149.8 139 55.4
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.1e-33 147.5 247 40.5
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.4e-32 144.8 215 43.7
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.9e-32 143.3 157 52.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.7e-31 139.4 157 50.3
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 5.7e-31 139.4 206 40.8
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.8e-30 137.1 173 43.9
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 6.3e-30 136.0 197 40.1
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-29 134.8 191 43.5
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 7.7e-28 129.0 241 37.8
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-26 124.8 143 51.0
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 5.5e-26 122.9 249 37.8
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 4.7e-25 119.8 127 52.0
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 4.0e-24 116.7 79 65.8
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.2e-24 116.3 86 70.9
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-23 114.0 92 65.2
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.3e-22 109.4 63 79.4
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-20 105.1 89 55.1
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 7.7e-20 102.4 131 45.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 2.9e-19 100.5 114 52.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 3.2e-18 97.1 124 46.0
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 2.3e-11 74.3 173 31.2
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-10 71.6 52 71.2
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-10 71.6 52 71.2
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-10 70.5 52 69.2
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.5e-10 68.9 52 67.3
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.5e-07 61.6 110 34.5
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 8.3e-06 55.8 37 67.6


User provided reference genes

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