Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1867.8 930 100.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1827.4 935 97.5
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1821.6 935 97.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1821.6 935 97.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1821.2 935 97.2
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1817.4 935 97.0
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1791.9 935 95.3
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1791.9 935 95.3
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1777.7 934 94.8
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1732.2 934 92.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1723.4 934 91.9
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1722.6 934 91.8
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1703.7 934 90.9
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1680.6 947 88.4
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1611.3 939 85.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 944 80.7
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 945 81.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 938 80.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 942 80.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 938 80.5
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 939 80.5
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 942 80.3
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 941 80.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 943 80.2
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 945 79.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 942 80.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 944 79.8
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 945 79.5
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 943 79.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 941 79.2
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 941 79.5
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 942 79.8
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 947 79.1
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 943 79.5
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 934 79.7
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 945 79.5
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1505.3 942 79.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 947 79.3
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1503.8 942 79.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1503.8 934 80.1
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 944 78.7
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 939 79.1
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 941 79.1
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 943 78.0
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 941 79.2
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 944 78.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 941 79.0
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 938 79.3
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 942 78.5
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 942 78.5
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 943 78.4
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1486.5 950 78.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 941 78.3
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 941 77.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 939 78.3
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 941 78.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 951 77.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1478.0 944 77.0
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1478.0 938 78.3
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 949 76.8
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 939 77.1
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 939 76.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 935 76.6
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 950 77.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 944 77.0
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 939 76.5
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 947 76.8
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 939 76.6
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 953 76.6
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 938 77.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1467.2 943 76.8
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 951 76.4
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 943 76.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 944 77.1
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 945 76.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 939 76.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 948 76.2
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1464.1 949 76.5
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 933 77.5
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 930 76.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 939 76.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 933 76.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 941 76.9
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 940 76.9
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1453.7 944 76.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1453.3 943 76.0
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1451.8 943 76.1
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1451.0 950 75.7
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1442.6 981 73.7
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1441.4 940 75.7
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1440.6 943 76.1
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1434.5 938 76.1
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1430.2 936 75.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 936 75.6
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1427.9 936 75.9
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1420.2 951 74.3
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1411.7 935 75.4
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1411.0 951 75.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1408.7 946 74.7
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1378.2 938 72.4
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1375.1 936 73.7
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1355.9 957 68.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1354.3 945 69.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1349.7 832 80.4
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1323.5 934 70.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1297.7 948 67.8
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1266.5 849 74.7
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1265.8 845 74.6
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1261.9 935 69.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1171.0 728 78.3
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1165.6 953 61.4
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1164.4 978 59.8
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1157.5 943 64.5
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1112.1 698 78.1
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1088.2 1014 53.9
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1077.4 936 59.5
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 7.2e-290 1000.7 661 74.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 5.2e-288 994.6 633 76.8
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 4.6e-268 928.3 696 65.1
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.9e-222 776.2 758 51.8
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 7.4e-202 708.4 463 74.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.2e-178 631.3 438 71.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.4e-122 443.4 303 69.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 3.0e-110 404.1 1305 25.3
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 5.6e-109 399.8 626 38.8
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 3.0e-78 297.7 202 73.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.2e-72 277.7 207 70.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.0e-57 229.6 179 65.4
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 3.3e-48 198.0 300 40.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.5e-48 196.4 107 86.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.6e-42 179.1 116 74.1
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.0e-37 162.2 139 60.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.0e-34 150.6 201 41.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.9e-28 131.0 64 90.6
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.1e-14 85.1 80 55.0


User provided reference genes

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