Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26189 Brassica carinata HOM05D000688 ORTHO05D004737 1.1e-74 283.1 136 100.0
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 6.4e-38 161.0 110 73.6
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 6.4e-38 161.0 110 73.6
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 1.9e-37 159.5 110 72.7
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 1.9e-37 159.5 97 79.4
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 1.9e-37 159.5 97 79.4
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 5.5e-37 157.9 110 71.8
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 1.1e-34 150.2 97 74.2
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 2.5e-34 149.1 110 67.3
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 5.6e-34 147.9 110 66.4
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 2.1e-33 146.0 110 65.5
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 6.2e-33 144.4 97 71.1
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 8.2e-33 144.1 110 65.5
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 9.0e-32 140.6 110 63.6
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 1.2e-28 130.2 115 57.4
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 5.3e-24 114.8 102 55.9
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 6.9e-24 114.4 102 55.9
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 9.0e-24 114.0 97 55.7
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 1.2e-23 113.6 99 56.6
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.2e-23 113.6 102 53.9
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 1.5e-23 113.2 100 57.0
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 1.5e-23 113.2 102 54.9
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 2.0e-23 112.8 104 53.8
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.0e-23 112.8 99 56.6
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.0e-23 112.8 99 56.6
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 3.4e-23 112.1 101 56.4
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 3.4e-23 112.1 102 51.0
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 3.4e-23 112.1 102 54.9
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 3.4e-23 112.1 100 54.0
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 5.9e-23 111.3 102 55.9
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 5.9e-23 111.3 102 52.9
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 5.9e-23 111.3 101 53.5
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 7.6e-23 110.9 102 54.9
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 1.0e-22 110.5 101 54.5
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.3e-22 110.2 101 53.5
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 1.3e-22 110.2 104 52.9
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 1.3e-22 110.2 100 54.0
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 1.7e-22 109.8 101 54.5
RcHm_v2.0_Chr5g0042241 Rosa chinensis HOM05D000688 ORTHO05D004737 1.7e-22 109.8 102 52.9
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.2e-22 109.4 101 53.5
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.2e-22 109.4 102 54.9
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.2e-22 109.4 102 54.9
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 2.9e-22 109.0 102 52.0
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 2.9e-22 109.0 102 53.9
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 3.8e-22 108.6 103 54.4
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 3.8e-22 108.6 104 51.9
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 3.8e-22 108.6 102 52.9
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 3.8e-22 108.6 102 52.0
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 5.0e-22 108.2 103 54.4
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 5.0e-22 108.2 99 53.5
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 5.0e-22 108.2 102 50.0
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 5.0e-22 108.2 102 52.0
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 6.5e-22 107.8 101 53.5
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 6.5e-22 107.8 102 53.9
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 6.5e-22 107.8 102 52.9
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 6.5e-22 107.8 102 52.9
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 6.5e-22 107.8 102 52.9
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 8.5e-22 107.5 104 51.9
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 8.5e-22 107.5 101 52.5
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.1e-21 107.1 101 54.5
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.1e-21 107.1 101 54.5
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 1.1e-21 107.1 102 52.9
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.4e-21 106.7 103 54.4
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 1.4e-21 106.7 103 54.4
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 1.4e-21 106.7 102 53.9
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 1.4e-21 106.7 102 53.9
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 1.4e-21 106.7 101 51.5
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 2.5e-21 105.9 99 50.5
Peaxi162Scf00053g00812 Petunia axillaris HOM05D000688 ORTHO05D004737 2.5e-21 105.9 102 52.9
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 2.5e-21 105.9 102 52.0
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 3.2e-21 105.5 102 52.0
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 4.2e-21 105.1 101 53.5
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 5.5e-21 104.8 103 52.4
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 5.5e-21 104.8 99 49.5
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 7.2e-21 104.4 99 48.5
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 7.2e-21 104.4 102 50.0
HPP92_002312 Vanilla planifolia HOM05D000688 ORTHO05D004737 7.2e-21 104.4 129 41.9
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 9.4e-21 104.0 101 51.5
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-20 103.6 101 52.5
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 1.2e-20 103.6 98 50.0
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 1.2e-20 103.6 101 51.5
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.6e-20 103.2 103 53.4
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 1.6e-20 103.2 102 50.0
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 47.5
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 47.5
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 47.5
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 47.5
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 47.5
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 52.5
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 2.1e-20 102.8 102 49.0
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 2.1e-20 102.8 101 50.5
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 2.1e-20 102.8 102 48.0
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 2.7e-20 102.4 102 49.0
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 2.7e-20 102.4 102 51.0
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.7e-20 102.4 101 47.5
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 3.6e-20 102.1 102 49.0
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 3.6e-20 102.1 101 52.5
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 3.6e-20 102.1 99 49.5
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 4.6e-20 101.7 102 50.0
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 4.6e-20 101.7 102 48.0
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 6.1e-20 101.3 102 52.9
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 6.1e-20 101.3 102 49.0
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 7.9e-20 100.9 106 50.0
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 7.9e-20 100.9 106 50.0
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.0e-19 100.5 103 48.5
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 1.4e-19 100.1 101 47.5
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.4e-19 100.1 106 50.0
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 1.4e-19 100.1 106 50.0
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 1.8e-19 99.8 102 46.1
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 1.8e-19 99.8 110 49.1
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 2.3e-19 99.4 96 49.0
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 3.9e-19 98.6 101 50.5
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 5.1e-19 98.2 114 47.4
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 5.1e-19 98.2 101 50.5
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 6.7e-19 97.8 104 50.0
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.1e-18 97.1 84 53.6
CDE08G0441 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 1.9e-18 96.3 101 46.5
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 1.9e-18 96.3 102 47.1
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 3.3e-18 95.5 101 45.5
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 3.3e-18 95.5 102 50.0
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 3.3e-18 95.5 100 45.0
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 3.3e-18 95.5 100 45.0
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 9.7e-18 94.0 101 49.5
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 9.7e-18 94.0 101 49.5
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 2.2e-17 92.8 90 47.8
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 2.2e-17 92.8 118 39.8
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 2.2e-17 92.8 122 38.5
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 2.8e-17 92.4 102 44.1
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 2.8e-17 92.4 132 40.9
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 6.3e-17 91.3 74 56.8
Nitab4.5_0001033g0090 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.4e-16 89.4 89 48.3
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 1.4e-08 63.5 43 60.5
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 3.4e-07 58.9 38 78.9
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 1.3e-06 57.0 76 36.8
SEGI_06643 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.2e-06 56.2 105 31.4
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 8.5e-06 54.3 92 32.6


User provided reference genes

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