Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 6.1e-106 387.5 197 100.0
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 3.9e-100 368.2 194 95.9
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 2.5e-99 365.5 194 95.9
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 7.3e-99 364.0 194 94.8
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 2.1e-98 362.5 194 94.8
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 2.1e-98 362.5 194 94.8
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 2.8e-98 362.1 194 94.3
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.8e-98 362.1 194 94.3
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 2.8e-98 362.1 194 95.4
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 4.7e-98 361.3 194 94.8
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 4.7e-98 361.3 194 94.8
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 4.7e-98 361.3 194 94.8
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 8.9e-97 357.1 194 94.8
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.5e-96 356.3 194 93.3
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 4.4e-96 354.8 194 93.3
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 2.9e-95 352.1 194 91.8
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 2.7e-93 345.5 194 91.8
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 5.6e-83 311.2 194 80.9
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 2.1e-82 309.3 194 79.4
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 6.2e-82 307.8 194 76.3
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 8.1e-82 307.4 194 77.3
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 8.1e-82 307.4 194 77.3
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 2.3e-81 305.8 193 78.2
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 3.1e-81 305.4 193 77.7
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 4.0e-81 305.1 194 76.8
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 6.8e-81 304.3 190 80.0
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 1.2e-80 303.5 194 76.8
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.2e-80 303.5 195 81.0
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 3.4e-80 302.0 194 76.3
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 3.4e-80 302.0 194 76.3
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 4.4e-80 301.6 194 77.3
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 5.8e-80 301.2 194 76.8
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 7.5e-80 300.8 194 74.2
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.3e-79 300.1 194 76.8
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.3e-79 300.1 194 76.3
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 1.7e-79 299.7 194 76.3
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 2.9e-79 298.9 194 75.8
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 8.3e-79 297.4 194 75.8
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 2.4e-78 295.8 192 73.4
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 3.2e-78 295.4 194 75.3
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 3.2e-78 295.4 194 75.3
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 4.1e-78 295.0 192 76.6
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 4.1e-78 295.0 197 74.6
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 4.1e-78 295.0 194 75.3
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.4e-78 294.7 194 73.2
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 7.1e-78 294.3 191 76.4
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 9.2e-78 293.9 194 74.2
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 9.2e-78 293.9 194 73.2
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.6e-77 293.1 190 74.7
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.6e-77 293.1 191 76.4
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.7e-77 292.4 194 73.7
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 4.6e-77 291.6 194 74.7
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 7.8e-77 290.8 194 74.2
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.0e-76 290.4 194 74.2
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.3e-76 290.0 192 75.0
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 1.7e-76 289.7 190 73.7
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 1.7e-76 289.7 194 73.2
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 5.1e-76 288.1 194 74.7
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 5.1e-76 288.1 194 74.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 5.1e-76 288.1 190 74.2
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.1e-75 287.0 194 73.2
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 1.9e-75 286.2 189 73.5
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 7.3e-75 284.3 190 74.7
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 2.8e-74 282.3 194 72.7
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 8.1e-74 280.8 194 73.2
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 1.1e-73 280.4 194 71.1
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 1.8e-73 279.6 189 72.5
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 5.2e-73 278.1 194 71.6
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 6.8e-73 277.7 194 73.2
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.0e-72 276.2 194 71.6
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 2.0e-72 276.2 191 71.2
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 7.6e-72 274.2 194 67.5
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 9.9e-72 273.9 194 71.6
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 1.7e-71 273.1 190 70.5
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 2.9e-71 272.3 191 70.7
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 4.9e-71 271.6 194 71.1
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 4.9e-71 271.6 199 71.4
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 6.4e-71 271.2 196 70.4
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 8.4e-71 270.8 190 71.1
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.1e-70 270.4 189 67.7
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.9e-70 269.6 187 72.2
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 2.4e-70 269.2 194 69.6
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 2.1e-69 266.2 194 68.6
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.0e-68 262.3 191 65.4
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 3.9e-68 261.9 193 68.4
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 1.1e-67 260.4 194 66.5
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.1e-67 260.4 194 66.5
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.1e-67 260.4 194 66.0
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.5e-67 260.0 194 65.5
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 1.9e-67 259.6 194 65.5
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.5e-67 259.2 194 66.5
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.5e-67 259.2 193 66.3
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.5e-67 259.2 194 65.5
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 3.3e-67 258.8 195 67.7
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 9.6e-67 257.3 192 66.1
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 4.8e-66 255.0 194 67.0
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.2e-66 254.6 190 66.3
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.2e-66 254.6 190 66.3
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 5.3e-65 251.5 192 64.6
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 2.6e-64 249.2 164 75.6
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.9e-63 245.7 193 63.2
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 9.3e-62 240.7 158 77.2
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 3.0e-60 235.7 194 58.8
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.8e-58 229.2 195 60.5
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.6e-58 228.8 162 67.3
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.4e-57 226.9 194 62.9
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 6.9e-57 224.6 194 61.3
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.2e-56 223.8 200 55.5
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 2.4e-54 216.1 193 53.9
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 9.3e-54 214.2 208 52.9
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 2.1e-53 213.0 194 60.3
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 4.6e-53 211.8 211 52.6
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 4.3e-51 205.3 194 56.7
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 8.1e-50 201.1 130 74.6
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.1e-49 200.7 184 57.6
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 1.2e-48 197.2 142 68.3
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 3.8e-47 192.2 193 49.7
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 5.1e-44 181.8 123 74.0
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 3.4e-40 169.1 194 50.0
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.7e-39 166.8 132 60.6
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.8e-39 165.6 130 63.8
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.7e-37 159.5 133 61.7
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.3e-36 156.4 151 57.0
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.3e-33 145.2 189 46.0
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 8.8e-28 127.9 110 60.0
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 4.3e-27 125.6 194 42.3
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 5.3e-25 118.6 192 38.5
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.0e-23 114.4 102 59.8
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 3.3e-19 99.4 199 31.7
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 1.1e-14 84.3 73 58.9
C03p89180 Brassica napus HOM05D003161 ORTHO05D101689 4.5e-08 62.4 43 74.4
unitig_744.g24087 Utricularia gibba HOM05D003161 ORTHO05D005173 7.2e-06 55.1 41 65.9
CBR_g3016 Chara braunii HOM05D001971 ORTHO05D003057 9.4e-06 54.7 207 27.1
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 9.4e-06 54.7 194 24.7


User provided reference genes

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