Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.3e-54 215.3 109 100.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 2.2e-41 172.2 107 83.2
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 5.0e-41 171.0 107 85.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.0e-41 171.0 107 85.0
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 4.2e-40 167.9 108 84.3
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 9.4e-40 166.8 108 81.5
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 9.4e-40 166.8 110 80.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.6e-39 166.0 108 80.6
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 3.6e-39 164.9 112 81.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 3.6e-39 164.9 108 81.5
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.2e-37 159.8 108 79.6
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 2.0e-37 159.1 107 80.4
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.6e-37 158.7 97 82.5
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 7.5e-37 157.1 97 82.5
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 5.0e-33 144.4 103 71.8
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 8.6e-25 117.1 103 56.3
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.5e-24 115.5 95 61.1
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.5e-24 115.5 95 61.1
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.5e-24 115.5 95 61.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.2e-24 114.8 95 61.1
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.2e-24 114.8 95 61.1
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.5e-24 113.6 95 60.0
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 1.6e-23 112.8 95 58.9
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.0e-22 110.2 93 60.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.0e-22 110.2 93 60.2
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.4e-22 109.8 95 58.9
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 3.0e-22 108.6 98 60.2
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 4.0e-22 108.2 95 53.7
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 3.4e-21 105.1 103 55.3
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 3.4e-21 105.1 92 60.9
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.4e-21 104.8 104 54.8
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 5.7e-21 104.4 94 59.6
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 5.7e-21 104.4 104 54.8
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 5.7e-21 104.4 94 58.5
BcaC02g08049 Brassica carinata HOM05D004811 ORTHO05D017514 7.5e-21 104.0 51 100.0
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 7.5e-21 104.0 52 98.1
BolC4t27414H Brassica oleracea HOM05D004811 ORTHO05D017514 9.8e-21 103.6 53 96.2
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 9.8e-21 103.6 52 98.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.7e-20 102.8 98 57.1
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.2e-20 102.4 94 54.3
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 3.7e-20 101.7 51 98.0
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 4.9e-20 101.3 51 98.0
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 4.9e-20 101.3 51 98.0
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 4.9e-20 101.3 96 55.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 6.3e-20 100.9 97 55.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 6.3e-20 100.9 92 56.5
C04p59020 Brassica napus HOM05D004811 ORTHO05D017514 6.3e-20 100.9 51 98.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 6.3e-20 100.9 96 56.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 6.3e-20 100.9 92 56.5
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.3e-20 100.9 92 56.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.1e-19 100.1 92 58.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.4e-19 99.8 93 58.1
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.4e-19 99.8 93 57.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 3.1e-19 98.6 95 56.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 3.1e-19 98.6 92 52.2
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.1e-19 98.2 91 56.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 4.1e-19 98.2 94 58.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 5.4e-19 97.8 91 52.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 5.4e-19 97.8 92 57.6
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 5.4e-19 97.8 92 56.5
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 7.0e-19 97.4 92 55.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.0e-19 97.4 94 54.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 9.2e-19 97.1 91 56.0
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 9.2e-19 97.1 91 56.0
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 9.2e-19 97.1 93 55.9
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.2e-18 96.7 94 55.3
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.6e-18 96.3 90 55.6
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.6e-18 96.3 97 57.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.7e-18 95.5 92 55.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 3.5e-18 95.1 92 53.3
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 3.5e-18 95.1 91 54.9
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.5e-18 94.7 92 54.3
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 4.5e-18 94.7 91 50.5
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 5.9e-18 94.4 92 53.3
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 7.8e-18 94.0 96 51.0
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.0e-17 93.6 89 55.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.0e-17 93.6 96 55.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.3e-17 93.2 93 55.9
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.7e-17 92.8 92 56.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.7e-17 92.8 92 56.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 2.3e-17 92.4 92 53.3
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.3e-17 92.4 91 51.6
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.3e-17 92.4 97 52.6
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.3e-17 92.4 92 56.5
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.9e-17 92.0 91 52.7
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.9e-17 92.0 93 53.8
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 5.0e-17 91.3 96 51.0
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.0e-17 91.3 91 50.5
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 5.0e-17 91.3 103 49.5
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 5.0e-17 91.3 92 53.3
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.6e-17 90.9 100 51.0
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 3.3e-16 88.6 95 50.5
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.3e-16 88.6 92 51.1
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.6e-16 87.8 78 55.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.6e-16 87.8 103 47.6
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 9.5e-16 87.0 97 51.5
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.6e-15 86.3 92 52.2
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.1e-15 85.9 95 48.4
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.8e-15 85.5 94 52.1
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.6e-15 85.1 96 51.0
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.7e-15 84.7 95 50.5
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.0e-14 83.6 93 50.5
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.0e-14 81.6 96 43.8
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 6.8e-14 80.9 92 48.9
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-13 80.1 95 50.5
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.0e-13 79.3 92 44.6
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 3.4e-13 78.6 105 43.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.4e-13 78.6 93 47.3
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.5e-13 77.4 91 45.1
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.1e-11 73.6 105 42.9
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.9e-11 72.8 95 44.2
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 7.0e-11 70.9 91 42.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.0e-09 67.0 94 40.4
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.3e-09 66.6 93 41.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.3e-09 66.6 98 41.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 5.6e-08 61.2 92 34.8
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 5.6e-08 61.2 100 37.0
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.8e-07 58.9 67 43.3


User provided reference genes

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