Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 3.4e-253 877.9 444 100.0
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.6e-234 815.8 445 92.4
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 2.7e-234 815.1 447 92.8
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 1.1e-232 809.7 449 92.0
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.3e-228 796.2 447 90.2
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.1e-216 756.5 437 89.2
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 7.3e-216 753.8 442 86.9
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 8.1e-215 750.4 451 84.5
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 2.9e-212 741.9 453 84.8
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.3e-207 726.5 418 87.6
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.4e-203 713.0 428 84.1
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 3.2e-203 711.8 434 83.9
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 1.7e-196 689.5 456 77.9
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 6.9e-182 641.0 449 74.2
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 7.0e-158 561.2 468 63.5
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.5e-155 553.5 424 67.0
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 1.9e-155 553.1 448 63.2
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 1.9e-155 553.1 441 65.1
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.2e-152 543.9 445 62.5
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.5e-152 543.5 405 67.4
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.7e-151 540.0 442 62.7
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 2.0e-149 533.1 428 62.9
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 2.9e-148 529.3 429 62.2
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 6.6e-148 528.1 435 61.8
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.9e-147 526.6 428 63.1
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 2.5e-147 526.2 445 60.9
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.2e-147 525.4 446 61.7
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.2e-147 525.4 446 61.7
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 4.2e-147 525.4 439 61.7
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 7.2e-147 524.6 438 61.6
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.1e-146 523.1 445 62.0
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 3.6e-146 522.3 413 63.9
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 5.2e-145 518.5 449 60.4
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 6.8e-145 518.1 443 60.7
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 6.8e-145 518.1 444 59.9
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.5e-144 516.9 468 59.2
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.5e-144 516.9 443 60.7
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.6e-144 516.2 441 60.1
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 3.4e-144 515.8 444 59.7
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 5.7e-144 515.0 445 61.8
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 9.8e-144 514.2 449 61.0
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.8e-143 512.7 442 60.6
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 2.8e-143 512.7 453 59.2
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.8e-143 512.7 441 59.9
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 6.3e-143 511.5 436 61.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.1e-142 510.8 452 59.3
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.4e-142 509.6 454 58.8
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 3.1e-142 509.2 452 60.2
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 4.1e-142 508.8 416 62.3
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.0e-141 506.5 430 61.9
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 3.5e-141 505.8 448 58.7
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.0e-140 504.2 425 60.9
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.3e-140 503.8 424 59.9
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.7e-140 503.4 433 59.8
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.7e-140 503.4 433 59.8
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 5.0e-140 501.9 413 62.7
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 1.5e-139 500.4 525 53.0
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 5.6e-139 498.4 436 59.2
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 9.5e-139 497.7 431 59.2
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.8e-138 496.1 422 58.1
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.6e-138 495.7 435 58.9
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 3.6e-138 495.7 420 61.0
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 3.6e-138 495.7 415 62.2
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 1.0e-137 494.2 437 59.7
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 2.3e-137 493.0 444 57.9
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 3.1e-137 492.7 443 57.6
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 6.8e-137 491.5 447 58.4
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 5.8e-136 488.4 428 58.4
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 7.5e-136 488.0 400 62.5
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 2.9e-135 486.1 432 57.9
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 6.4e-135 485.0 442 57.2
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 4.1e-134 482.3 384 62.8
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 9.2e-134 481.1 480 55.0
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.0e-133 479.9 429 57.8
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.1e-131 474.2 439 57.6
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 4.3e-131 472.2 391 60.6
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.8e-130 469.5 419 58.5
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 6.2e-130 468.4 437 56.3
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 1.8e-129 466.8 403 59.6
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.4e-126 456.4 402 57.5
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 7.8e-125 451.4 437 55.1
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 5.1e-124 448.7 402 58.5
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 5.1e-124 448.7 423 52.5
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 6.6e-124 448.4 382 61.3
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.6e-122 443.7 427 55.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.3e-121 439.9 392 58.7
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 2.3e-121 439.9 379 58.3
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 6.8e-121 438.3 425 55.3
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 6.8e-121 438.3 425 55.3
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 4.6e-117 425.6 420 52.4
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.7e-116 423.7 454 51.8
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 3.9e-116 422.5 414 55.8
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 5.1e-116 422.2 428 54.9
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.7e-111 407.1 367 58.3
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.3e-108 396.7 349 56.7
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 1.9e-107 393.7 457 48.4
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.0e-104 383.6 573 41.5
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 9.6e-99 364.8 412 49.8
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 3.4e-96 356.3 388 50.8
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.9e-94 350.5 300 58.7
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 4.6e-93 345.9 320 56.2
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.8e-92 344.0 439 46.0
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.4e-89 334.3 255 65.9
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.8e-84 317.4 315 52.1
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.0e-76 291.6 290 52.1
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 3.8e-71 273.1 401 41.1
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 7.2e-70 268.9 244 55.7
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 2.2e-66 257.3 264 52.3
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 6.5e-63 245.7 455 35.8
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 3.5e-56 223.4 294 43.5
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.9e-47 193.7 126 74.6
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.9e-47 193.7 126 74.6
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.1e-45 187.6 294 38.4
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 8.3e-42 175.6 185 47.0
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 3.2e-38 163.7 125 64.8
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.4e-36 158.3 112 70.5
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 9.1e-33 145.6 131 61.8
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 1.2e-24 118.6 190 38.9
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-23 112.5 63 77.8
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 1.6e-21 108.2 131 49.6
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 2.8e-21 107.5 109 49.5
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 3.1e-20 104.0 139 41.0
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-09 68.2 145 31.7


User provided reference genes

Program Settings