Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.0e-66 256.5 126 100.0
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 3.3e-60 235.0 148 83.8
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.2e-49 199.9 151 73.5
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 9.8e-41 170.2 172 59.9
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 9.6e-28 127.1 140 52.1
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.6e-27 126.3 141 51.8
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.6e-27 126.3 141 51.8
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-26 123.6 141 50.4
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 1.8e-26 122.9 140 50.7
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-26 122.1 141 50.4
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 1.4e-23 113.2 81 74.1
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 2.4e-23 112.5 141 46.1
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 9.3e-23 110.5 140 45.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 9.3e-23 110.5 140 45.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.7e-21 106.3 141 44.0
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 3.9e-21 105.1 140 44.3
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 9.6e-20 100.5 141 43.3
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 9.6e-20 100.5 141 43.3
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 9.6e-20 100.5 141 43.3
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.1e-18 97.1 139 40.3
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.8e-18 96.3 140 41.4
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.2e-17 93.6 140 41.4
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.9e-16 89.0 64 73.4
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.5e-14 82.0 141 35.5
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 6.0e-14 81.3 141 35.5
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 7.9e-14 80.9 133 37.6
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 3.9e-13 78.6 130 37.7
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.9e-13 78.6 129 38.0
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 5.1e-13 78.2 134 36.6
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 5.1e-13 78.2 133 36.8
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 6.6e-13 77.8 133 36.8
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 6.6e-13 77.8 133 36.8
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 8.7e-13 77.4 131 36.6
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.1e-12 77.0 133 36.8
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 1.1e-12 77.0 134 36.6
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 1.1e-12 77.0 134 36.6
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.5e-12 76.6 130 36.9
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.5e-12 76.6 130 36.9
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.5e-12 76.6 133 35.3
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.9e-12 76.3 131 36.6
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.9e-12 76.3 67 61.2
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.9e-12 76.3 150 33.3
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 2.5e-12 75.9 133 36.1
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 3.3e-12 75.5 131 35.1
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 4.3e-12 75.1 130 36.9
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 4.3e-12 75.1 130 36.2
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 4.3e-12 75.1 139 33.1
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 4.3e-12 75.1 133 34.6
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 5.6e-12 74.7 131 35.9
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 5.6e-12 74.7 132 34.8
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 5.6e-12 74.7 155 31.6
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 7.4e-12 74.3 131 35.9
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 7.4e-12 74.3 139 32.4
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 9.6e-12 73.9 132 37.1
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 9.6e-12 73.9 129 36.4
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 9.6e-12 73.9 133 33.8
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 9.6e-12 73.9 130 36.2
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 9.6e-12 73.9 133 36.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.3e-11 73.6 133 36.1
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.3e-11 73.6 133 35.3
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.3e-11 73.6 133 34.6
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.6e-11 73.2 130 36.2
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.6e-11 73.2 130 36.2
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.6e-11 73.2 130 36.2
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.6e-11 73.2 130 36.2
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.6e-11 73.2 134 36.6
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.1e-11 72.8 132 35.6
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 2.1e-11 72.8 129 35.7
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.8e-11 72.4 133 34.6
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.8e-11 72.4 133 34.6
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.8e-11 72.4 137 35.8
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 3.6e-11 72.0 130 33.8
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 3.6e-11 72.0 129 36.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 4.8e-11 71.6 133 34.6
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 4.8e-11 71.6 129 34.9
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.8e-11 71.6 131 34.4
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 6.2e-11 71.2 129 34.1
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 6.2e-11 71.2 132 34.8
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 6.2e-11 71.2 132 34.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 6.2e-11 71.2 132 35.6
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 6.2e-11 71.2 132 35.6
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.1e-10 70.5 129 34.9
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 1.1e-10 70.5 132 33.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.4e-10 70.1 132 33.3
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.4e-10 70.1 132 34.1
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.8e-10 69.7 132 34.1
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.8e-10 69.7 132 34.8
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 1.8e-10 69.7 131 33.6
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.4e-10 69.3 131 35.1
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 2.4e-10 69.3 141 31.2
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 2.4e-10 69.3 132 32.6
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.1e-10 68.9 141 31.9
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.1e-10 68.9 130 34.6
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 3.1e-10 68.9 132 31.1
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 5.3e-10 68.2 129 34.9
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.9e-10 67.8 113 36.3
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 6.9e-10 67.8 131 32.8
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 9.0e-10 67.4 131 32.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.0e-10 67.4 97 39.2
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.0e-10 67.4 132 33.3
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 9.0e-10 67.4 130 33.1
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.2e-09 67.0 118 39.0
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.2e-09 67.0 129 34.1
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.5e-09 66.6 131 33.6
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 2.0e-09 66.2 144 31.9
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 3.4e-09 65.5 135 30.4
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 3.4e-09 65.5 88 39.8
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 5.8e-09 64.7 99 34.3
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 9.9e-09 63.9 142 28.2
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 9.9e-09 63.9 142 30.3
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 1.7e-08 63.2 129 31.8
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.7e-08 63.2 79 38.0
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.2e-08 62.8 79 38.0
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 2.2e-08 62.8 79 38.0
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.9e-08 62.4 132 32.6
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.9e-08 61.6 91 40.7
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 6.4e-08 61.2 118 38.1
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.4e-08 61.2 132 31.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.4e-07 59.3 142 29.6
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.2e-07 58.9 132 31.8
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 4.2e-07 58.5 73 39.7


User provided reference genes

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