Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08049 Brassica carinata HOM05D002024 ORTHO05D004352 0.0e+00 1221.5 650 100.0
BolC6t36935H Brassica oleracea HOM05D002024 ORTHO05D004352 1.5e-310 1068.9 869 72.5
BcaC08g44316 Brassica carinata HOM05D002024 ORTHO05D004352 2.0e-310 1068.5 866 72.6
C06p17400 Brassica napus HOM05D002024 ORTHO05D004352 7.0e-308 1060.1 896 70.5
A05p16460 Brassica napus HOM05D002024 ORTHO05D004352 8.1e-288 993.4 878 67.8
BraA05t20551Z Brassica rapa HOM05D002024 ORTHO05D004352 3.4e-278 961.4 876 66.6
BcaB02g08047 Brassica carinata HOM05D002024 ORTHO05D004352 7.3e-265 917.1 884 63.8
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 8.4e-253 877.1 882 60.0
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 7.9e-227 790.8 882 56.9
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 1.4e-210 736.9 882 53.7
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 2.0e-206 723.0 884 52.0
Carub.0007s3168 Capsella rubella HOM05D002024 ORTHO05D004352 1.0e-197 694.1 889 51.2
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 4.1e-175 619.0 890 48.0
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 2.1e-147 526.9 914 42.2
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 1.4e-130 471.1 925 39.4
BcaC08g44317 Brassica carinata HOM05D002024 ORTHO05D004352 2.6e-108 397.1 276 80.8
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 2.6e-108 397.1 454 54.6
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 1.3e-107 394.8 898 34.3
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 5.3e-106 389.4 932 34.3
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 2.9e-104 383.6 899 34.4
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 1.5e-103 381.3 878 34.3
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 1.9e-103 380.9 950 34.3
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 3.2e-103 380.2 882 35.3
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 3.6e-102 376.7 952 33.4
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 1.4e-101 374.8 925 34.4
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 8.8e-101 372.1 992 33.5
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 1.1e-100 371.7 883 34.4
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 1.1e-100 371.7 951 34.0
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 1.5e-100 371.3 902 34.4
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 2.0e-100 370.9 898 33.5
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 9.7e-100 368.6 914 32.9
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 1.3e-99 368.2 899 34.0
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 2.8e-99 367.1 916 34.7
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 1.1e-98 365.2 908 33.5
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 3.1e-98 363.6 936 33.2
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 3.1e-98 363.6 908 33.3
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 4.1e-98 363.2 932 33.6
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 4.1e-98 363.2 928 33.9
Aa31LG2G1850 Aethionema arabicum HOM05D002024 ORTHO05D004352 9.1e-98 362.1 737 38.5
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 9.1e-98 362.1 901 32.6
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 4.5e-97 359.8 957 32.3
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 7.7e-97 359.0 952 32.4
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 7.7e-97 359.0 952 32.7
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 1.3e-96 358.2 871 33.2
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 2.2e-96 357.5 932 33.4
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 6.5e-96 355.9 871 35.1
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 8.5e-96 355.5 893 33.4
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 8.5e-96 355.5 928 32.8
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 1.5e-95 354.8 934 33.1
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 1.9e-95 354.4 903 34.1
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 4.2e-95 353.2 956 32.0
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 5.5e-95 352.8 959 32.3
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 7.2e-95 352.4 900 33.9
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 1.2e-94 351.7 950 32.6
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 1.6e-94 351.3 975 32.2
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 1.6e-94 351.3 891 33.0
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 1.4e-93 348.2 1038 31.5
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 1.4e-93 348.2 888 34.0
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 2.3e-93 347.4 940 32.7
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 5.2e-93 346.3 917 33.7
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 4.4e-92 343.2 936 33.2
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 2.2e-91 340.9 959 31.9
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 2.2e-91 340.9 956 31.8
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 2.8e-91 340.5 930 31.9
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.8e-91 340.5 849 34.5
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 6.3e-91 339.3 919 31.9
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.4e-90 338.2 856 33.9
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 1.8e-90 337.8 926 32.6
Gohir.D13G101300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.1e-90 336.7 878 33.1
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 5.4e-90 336.3 916 32.2
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 9.1e-90 335.5 976 31.1
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 9.1e-90 335.5 884 32.7
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 1.1e-87 328.6 993 30.4
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.1e-87 328.6 846 33.9
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 1.5e-87 328.2 942 31.7
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 4.2e-87 326.6 923 30.2
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.6e-86 324.7 865 32.8
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.0e-85 322.0 940 31.3
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 1.4e-85 321.6 939 32.2
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 5.2e-85 319.7 921 31.3
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 6.8e-85 319.3 870 31.4
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 7.5e-84 315.8 958 31.8
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 7.5e-84 315.8 1007 29.4
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 9.8e-84 315.5 874 32.6
Sed0002639 Sechium edule HOM05D002024 ORTHO05D004352 2.8e-83 313.9 967 30.5
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 3.7e-83 313.5 919 32.2
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.9e-83 313.2 942 31.1
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 8.3e-83 312.4 879 31.5
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 2.7e-81 307.4 925 31.0
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 5.9e-81 306.2 928 31.0
SpUn0001_0780 Schrenkiella parvula HOM05D002024 ORTHO05D004352 1.3e-80 305.1 687 36.8
Dinv25060 Davidia involucrata HOM05D002024 ORTHO05D004352 2.9e-80 303.9 575 36.9
Lj1C1068G14 Lonicera japonica HOM05D002024 ORTHO05D004352 2.9e-80 303.9 749 34.4
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 5.0e-80 303.1 856 30.6
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 6.6e-80 302.8 916 31.0
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 8.6e-80 302.4 932 30.6
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 1.1e-79 302.0 1050 29.2
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 2.5e-79 300.8 930 30.9
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 9.5e-79 298.9 923 29.8
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 4.7e-78 296.6 974 29.4
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 4.7e-78 296.6 891 31.6
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 4.7e-78 296.6 859 30.3
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 4.7e-78 296.6 857 30.6
CiPaw.09G169000 Carya illinoinensis HOM05D002024 ORTHO05D004352 1.0e-77 295.4 543 36.8
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 6.8e-77 292.7 941 29.8
SGA_v2.0_scaffold112G31637 Striga asiatica HOM05D002024 ORTHO05D004352 2.2e-75 287.7 800 32.2
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 5.9e-73 279.6 963 27.4
AL1G64840 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 3.3e-71 273.9 565 37.0
Actinidia37806 Actinidia chinensis HOM05D002024 ORTHO05D004352 4.3e-71 273.5 668 33.8
Rhsim03G0051500 Rhododendron simsii HOM05D002024 ORTHO05D004352 4.3e-71 273.5 284 52.1
C01p34390 Brassica napus HOM05D002024 ORTHO05D004352 1.6e-70 271.6 723 32.9
BolC1t03409H Brassica oleracea HOM05D002024 ORTHO05D004352 1.6e-70 271.6 723 32.9
HPP92_007980 Vanilla planifolia HOM05D002024 ORTHO05D004352 6.8e-69 266.2 883 28.0
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 1.2e-68 265.4 897 28.7
RcHm_v2.0_Chr3g0496321 Rosa chinensis HOM05D002024 ORTHO05D004352 3.4e-68 263.8 476 37.4
A01p26970 Brassica napus HOM05D002024 ORTHO05D004352 7.5e-68 262.7 779 32.6
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 1.3e-67 261.9 913 27.7
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 8.3e-67 259.2 949 27.2
Thhalv10023339m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 8.6e-64 249.2 632 34.5
BcaC09g49622 Brassica carinata HOM05D002024 ORTHO05D004352 2.5e-63 247.7 694 32.1
Carub.0002s0944 Capsella rubella HOM05D002024 ORTHO05D004352 4.0e-61 240.4 746 30.4
BraA01t02832Z Brassica rapa HOM05D002024 ORTHO05D004352 5.2e-61 240.0 816 30.5
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 6.8e-61 239.6 932 28.6
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 5.8e-60 236.5 796 29.0
Lj1g0005341 Lotus japonicus HOM05D002024 ORTHO05D004352 4.9e-59 233.4 717 30.1
Cpa.g.sc161.17 Carica papaya HOM05D001182 ORTHO05D007690 4.1e-58 230.3 229 53.7
Phvul.001G114400 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 1.2e-57 228.8 594 31.1
DCAR_009083 Daucus carota HOM05D002024 ORTHO05D004352 4.3e-55 220.3 511 31.9
arahy.Tifrunner.gnm1.ann1.A2IDII Arachis hypogaea HOM05D002024 ORTHO05D004352 1.8e-53 214.9 248 47.6
arahy.Tifrunner.gnm1.ann1.91ILIR Arachis hypogaea HOM05D002024 ORTHO05D004352 8.9e-53 212.6 248 47.2
TPR.G17861 Trifolium pratense HOM05D002024 ORTHO05D004352 2.0e-52 211.5 535 31.2
Lalb_Chr14g0364731 Lupinus albus HOM05D002024 ORTHO05D004352 2.6e-52 211.1 693 28.3
Zm00001eb047500 Zea mays HOM05D002024 ORTHO05D004352 4.9e-51 206.8 890 26.7
Ca_08301_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 6.4e-51 206.5 482 32.4
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 3.2e-50 204.1 478 31.8
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 5.4e-50 203.4 559 29.2
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 5.4e-50 203.4 556 29.5
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 1.6e-49 201.8 566 30.4
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 6.0e-49 199.9 558 31.4
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 5.1e-48 196.8 250 46.0
VMungo1383G0418 Vigna mungo HOM05D002024 ORTHO05D004352 1.6e-46 191.8 250 43.6
BcaB04g20134 Brassica carinata HOM05D002024 ORTHO05D004352 1.1e-45 189.1 394 34.8
CARHR055540 Cardamine hirsuta HOM05D002024 ORTHO05D004352 9.3e-42 176.0 445 30.6
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 3.0e-40 171.0 462 29.7
Os10g0437200 Oryza sativa ssp. japonica HOM05D002024 ORTHO05D004352 1.5e-39 168.7 267 37.5
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 2.1e-33 148.3 523 27.0
Glyma.05G079600 Glycine max HOM05D002024 ORTHO05D004352 1.3e-32 145.6 333 31.8
ECA233G2263 Erigeron canadensis HOM05D002024 ORTHO05D004352 1.6e-30 138.7 330 29.7
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 8.1e-30 136.3 461 32.8
Zm00001eb004370 Zea mays HOM05D002024 ORTHO05D004352 1.2e-28 132.5 408 29.2
Zm00001eb416680 Zea mays HOM05D002024 ORTHO05D004352 1.6e-25 122.1 174 43.7
Medtr7g087760 Medicago truncatula HOM05D002024 ORTHO05D010171 3.5e-25 120.9 110 56.4
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 1.0e-24 119.4 472 28.4
Zm00001eb141950 Zea mays HOM05D002024 ORTHO05D004352 1.0e-24 119.4 177 42.4
Zm00001eb036230 Zea mays HOM05D002024 ORTHO05D004352 9.6e-23 112.8 174 43.1
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 2.8e-22 111.3 474 25.7
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 1.0e-19 102.8 253 28.1
AagrBONN_evm.TU.Sc2ySwM_228.1889 Anthoceros agrestis HOM05D002024 ORTHO05D004352 8.4e-19 99.8 302 26.8
RcHm_v2.0_Chr3g0496311 Rosa chinensis HOM05D002024 ORTHO05D004352 6.7e-16 90.1 256 32.8
Zm00001eb184580 Zea mays HOM05D002024 ORTHO05D022840 6.3e-14 83.6 132 37.9
CSS0046306 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.1e-13 82.8 47 80.9
AUR62035829 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.1e-13 82.8 97 43.3
CSS0008621 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.5e-12 79.0 293 30.0
HanXRQChr01g0019161 Helianthus annuus HOM05D002024 ORTHO05D004352 1.5e-12 79.0 67 55.2
AUR62009458 Chenopodium quinoa HOM05D002024 ORTHO05D004352 2.6e-12 78.2 97 41.2
Zm00001eb010270 Zea mays HOM05D002024 ORTHO05D022840 7.6e-12 76.6 132 35.6
Zm00001eb152240 Zea mays HOM05D002024 ORTHO05D022840 7.6e-12 76.6 132 35.6
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 2.9e-11 74.7 98 37.8
SEGI_34394 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 8.4e-11 73.2 101 42.6
Mapoly0003s0296 Marchantia polymorpha HOM05D002024 ORTHO05D004352 1.6e-09 68.9 266 27.1
DCAR_009084 Daucus carota HOM05D002024 ORTHO05D004352 6.7e-08 63.5 239 29.3
VMungo1383G1234 Vigna mungo HOM05D002024 ORTHO05D009409 6.7e-08 63.5 39 71.8
HanXRQChr10g0278471 Helianthus annuus HOM05D002024 ORTHO05D004352 9.7e-07 59.7 53 56.6
HanXRQChr06g0183141 Helianthus annuus HOM05D002024 ORTHO05D004352 2.8e-06 58.2 105 38.1
HanXRQChr10g0303791 Helianthus annuus HOM05D002024 ORTHO05D004352 3.7e-06 57.8 67 41.8
HanXRQChr01g0019171 Helianthus annuus HOM05D002024 ORTHO05D004352 4.8e-06 57.4 53 54.7
HanXRQChr10g0278481 Helianthus annuus HOM05D002024 ORTHO05D004352 4.8e-06 57.4 40 62.5
Hma1.2p1_0297F.1_g117130 Hydrangea macrophylla HOM05D002024 ORTHO05D022840 6.3e-06 57.0 54 50.0


User provided reference genes

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