Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 0.0e+00 1083.2 555 100.0
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 9.7e-266 919.8 585 85.3
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 4.6e-260 901.0 571 85.3
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.0e-259 899.8 584 85.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.8e-257 891.0 598 80.9
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.8e-257 891.0 598 80.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-256 889.0 588 82.0
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.1e-256 887.9 588 82.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.1e-256 887.9 588 82.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.9e-254 881.7 592 80.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.7e-249 865.9 588 80.4
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 6.3e-249 864.0 588 80.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-245 852.8 612 75.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.6e-244 849.4 595 77.6
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.7e-242 840.9 615 73.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.6e-239 832.8 612 73.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.6e-218 762.3 604 68.5
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 4.0e-203 711.8 614 64.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.9e-201 705.7 579 66.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 7.3e-181 637.9 616 58.3
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.4e-176 623.6 622 56.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.2e-176 622.1 636 56.0
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.2e-175 620.5 606 57.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 6.7e-174 614.8 633 55.5
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.3e-173 612.5 619 55.4
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.4e-171 606.3 614 55.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.4e-171 606.3 624 55.3
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.5e-170 603.6 610 55.2
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 3.4e-170 602.4 616 54.5
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.4e-170 602.4 580 60.5
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-168 597.0 613 54.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.9e-168 596.7 586 57.5
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-168 596.7 612 55.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.9e-168 596.7 617 54.9
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.2e-168 595.9 617 54.8
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.1e-168 594.7 613 55.0
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.2e-167 594.0 612 55.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.6e-167 593.6 613 55.3
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.1e-167 593.2 625 53.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.5e-167 592.4 625 54.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-166 590.5 612 54.9
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.1e-165 587.4 625 53.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.1e-165 587.4 622 55.9
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 7.4e-165 584.7 615 55.6
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 9.6e-165 584.3 628 53.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 9.6e-165 584.3 624 53.4
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.1e-164 583.2 597 55.4
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.8e-164 582.8 588 55.6
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.7e-164 582.4 595 53.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.7e-164 582.4 614 53.4
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 4.8e-164 582.0 600 55.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 4.8e-164 582.0 623 53.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 6.2e-164 581.6 592 53.9
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-163 580.9 609 53.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-163 580.9 626 52.4
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 3.1e-163 579.3 622 53.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.3e-163 578.6 599 53.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.4e-162 575.9 599 53.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 4.5e-162 575.5 615 53.2
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.0e-161 574.3 623 52.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.3e-161 573.9 591 54.0
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.9e-161 572.8 597 53.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.8e-161 572.4 603 52.7
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 6.5e-161 571.6 597 54.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 8.4e-161 571.2 597 53.8
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.9e-160 570.1 604 53.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 4.2e-160 568.9 631 51.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 9.3e-160 567.8 595 53.1
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 9.3e-160 567.8 608 53.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.6e-159 567.0 569 55.7
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.1e-159 566.6 625 52.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.5e-159 565.8 632 51.7
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 7.9e-159 564.7 605 54.0
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.3e-158 563.9 615 53.2
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.3e-158 563.1 626 53.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-158 563.1 602 54.5
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 5.1e-158 562.0 632 50.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.7e-158 561.6 607 52.7
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.7e-158 561.6 594 53.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.1e-157 560.8 626 50.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.5e-157 559.7 617 51.5
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.7e-157 558.5 593 54.5
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 7.4e-157 558.1 576 54.5
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.8e-156 556.2 577 53.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.7e-156 555.8 612 52.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 4.8e-156 555.4 620 52.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 6.3e-156 555.1 634 50.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.8e-155 553.5 593 54.8
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.1e-155 552.4 611 51.6
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.1e-155 552.4 632 50.5
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.0e-154 550.1 605 53.2
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 7.6e-154 548.1 395 79.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 5.0e-153 545.4 597 52.1
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 8.5e-153 544.7 594 52.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 5.5e-152 542.0 631 50.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.2e-152 541.6 630 51.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 7.2e-152 541.6 588 52.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.6e-151 540.4 629 50.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.7e-151 539.7 634 49.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.0e-150 537.7 597 51.1
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.8e-150 537.0 637 49.6
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-149 533.1 543 55.1
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.7e-148 530.4 628 50.5
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.1e-147 526.2 619 48.8
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.9e-145 519.6 615 50.2
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-141 507.3 473 62.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.7e-140 503.8 617 49.3
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.0e-138 496.9 505 54.9
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 8.2e-132 474.9 528 52.8
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 6.5e-129 465.3 628 45.2
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 7.2e-128 461.8 562 48.2
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.2e-122 444.5 564 47.5
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.5e-122 443.0 349 73.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.5e-122 443.0 349 73.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.7e-121 440.7 578 45.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 6.5e-121 438.7 547 48.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.8e-118 428.7 500 50.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-117 427.9 441 60.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.4e-117 426.4 617 43.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.7e-114 416.8 662 40.9
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.3e-113 413.7 235 92.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-109 401.4 213 100.0
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.1e-107 394.8 480 51.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-105 387.5 268 81.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.5e-96 357.8 490 45.9
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-95 354.0 396 53.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.9e-92 342.8 632 38.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 6.4e-92 342.4 488 45.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.6e-87 327.8 643 37.8
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.6e-82 309.7 390 47.9
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 9.9e-77 292.0 649 33.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.9e-76 290.4 156 95.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 4.6e-74 283.1 567 36.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-73 281.6 357 48.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-73 281.6 357 48.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.6e-71 273.5 412 42.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.4e-69 266.9 243 58.8
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.7e-66 257.3 222 56.3
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 9.3e-59 232.3 148 79.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-56 225.3 201 58.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.3e-55 221.9 540 33.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 9.6e-48 195.7 771 26.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 7.9e-42 176.0 525 30.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 6.3e-39 166.4 497 28.6
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.6e-34 150.2 294 37.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.5e-32 144.4 186 45.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.3e-31 142.1 562 26.5
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.2e-19 100.9 60 78.3
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.7e-18 97.8 77 71.4
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.8e-17 95.1 247 33.6
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.1e-16 92.4 79 58.2
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 4.2e-11 73.9 84 50.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-08 65.9 55 58.2
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 3.7e-07 60.8 47 59.6


User provided reference genes

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