Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 4.4e-175 617.8 311 100.0
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 6.9e-112 407.9 416 58.2
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 7.9e-108 394.4 417 57.3
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 3.0e-107 392.5 417 57.1
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 3.3e-106 389.0 417 56.8
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 4.3e-106 388.7 417 56.6
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 7.4e-106 387.9 416 55.8
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 7.4e-106 387.9 416 55.8
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 3.7e-105 385.6 416 55.5
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 6.3e-105 384.8 416 55.5
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 1.8e-104 383.3 416 55.3
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 2.4e-104 382.9 417 56.1
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 6.9e-104 381.3 419 53.9
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 7.7e-103 377.9 418 55.5
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 3.2e-101 372.5 419 53.2
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 1.1e-98 364.0 420 52.9
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 4.4e-98 362.1 418 52.4
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 2.8e-97 359.4 419 50.8
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 9.1e-96 354.4 420 51.9
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 1.1e-85 320.9 422 48.1
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 2.0e-82 310.1 416 45.2
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.4e-80 303.1 425 46.4
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 5.3e-80 302.0 385 47.8
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 2.7e-79 299.7 419 46.1
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 4.5e-79 298.9 424 45.3
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 5.9e-79 298.5 419 45.8
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 7.7e-79 298.1 417 45.8
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 7.7e-79 298.1 416 45.7
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 1.0e-78 297.7 421 45.4
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 1.7e-78 297.0 417 45.6
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.7e-78 297.0 425 45.2
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 2.2e-78 296.6 414 45.9
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.9e-78 296.2 420 45.5
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.9e-78 296.2 423 45.4
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 5.0e-78 295.4 423 45.4
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 1.9e-77 293.5 424 45.0
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 4.2e-77 292.4 424 44.1
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 5.5e-77 292.0 410 44.9
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 7.2e-77 291.6 422 45.7
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 2.1e-76 290.0 418 43.3
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 2.1e-76 290.0 392 44.6
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 8.0e-76 288.1 395 46.1
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 8.0e-76 288.1 416 43.3
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 8.0e-76 288.1 417 45.1
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 1.0e-75 287.7 415 43.1
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.0e-75 287.7 417 45.1
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 1.0e-75 287.7 392 44.4
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 1.4e-75 287.3 416 43.8
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 1.8e-75 287.0 414 44.9
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 2.3e-75 286.6 409 43.5
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 4.0e-75 285.8 433 43.2
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 5.2e-75 285.4 418 43.8
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 8.8e-75 284.6 380 46.1
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 8.8e-75 284.6 423 44.7
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 1.5e-74 283.9 389 46.3
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 2.0e-74 283.5 389 45.8
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 2.0e-74 283.5 417 43.9
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 2.6e-74 283.1 422 43.8
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 4.4e-74 282.3 419 44.2
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 5.7e-74 282.0 419 43.4
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 9.8e-74 281.2 420 44.3
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.7e-73 280.4 424 42.7
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 1.7e-73 280.4 419 43.2
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 2.2e-73 280.0 391 44.8
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 3.7e-73 279.3 418 42.3
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 4.9e-73 278.9 389 44.0
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 1.1e-72 277.7 418 43.3
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 1.4e-72 277.3 389 45.5
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 1.8e-72 276.9 421 43.2
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 2.4e-72 276.6 425 41.9
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 2.4e-72 276.6 425 42.1
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 3.1e-72 276.2 425 43.5
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 3.1e-72 276.2 417 43.4
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 7.0e-72 275.0 378 45.5
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 9.1e-72 274.6 432 42.1
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 9.1e-72 274.6 415 42.2
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 1.2e-71 274.2 406 43.1
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 1.2e-71 274.2 383 44.1
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 1.2e-71 274.2 414 44.0
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 1.6e-71 273.9 414 42.8
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 2.0e-71 273.5 391 44.2
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 4.5e-71 272.3 391 43.5
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 5.9e-71 271.9 391 43.5
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 7.7e-71 271.6 391 43.5
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 1.7e-70 270.4 391 43.2
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 2.3e-70 270.0 393 43.8
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 2.9e-70 269.6 379 45.1
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 3.8e-70 269.2 423 42.1
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 3.8e-70 269.2 407 41.5
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 6.6e-70 268.5 415 43.9
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 8.6e-70 268.1 416 42.8
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 1.5e-69 267.3 416 41.3
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 1.5e-69 267.3 399 44.1
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 1.9e-69 266.9 408 42.4
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 3.3e-69 266.2 424 42.0
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 4.2e-69 265.8 419 42.7
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 5.5e-69 265.4 414 42.8
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 7.2e-69 265.0 422 41.7
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 2.8e-68 263.1 418 41.9
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 4.7e-68 262.3 380 44.5
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 4.7e-68 262.3 410 42.4
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 6.1e-68 261.9 404 41.8
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 8.0e-68 261.5 481 37.8
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 1.8e-67 260.4 393 42.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.3e-67 260.0 402 42.0
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 2.3e-67 260.0 417 39.6
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 5.2e-67 258.8 416 41.8
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 7.5e-66 255.0 397 41.1
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.2e-65 253.4 462 39.0
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 4.9e-65 252.3 487 36.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 8.3e-65 251.5 403 41.4
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 3.5e-63 246.1 390 41.0
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 4.6e-63 245.7 387 41.1
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 1.3e-62 244.2 421 38.7
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.1e-61 241.1 391 42.5
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 5.6e-61 238.8 387 41.9
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 9.5e-61 238.0 416 38.9
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 3.6e-60 236.1 368 42.9
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 4.0e-59 232.6 244 52.5
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 4.4e-58 229.2 362 42.0
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 6.4e-57 225.3 557 33.8
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 3.2e-56 223.0 420 37.4
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 2.0e-55 220.3 403 37.0
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 2.3e-54 216.9 402 37.3
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 5.0e-54 215.7 421 36.6
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 6.2e-52 208.8 418 34.4
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 8.1e-52 208.4 320 42.5
BolC6t37451H Brassica oleracea HOM05D000283 ORTHO05D004861 3.1e-51 206.5 195 62.1
CSS0019692 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 9.8e-50 201.4 172 61.0
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 1.3e-49 201.1 319 43.3
CSS0006131 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.9e-49 199.9 172 61.0
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 3.2e-48 196.4 378 36.5
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 3.2e-48 196.4 369 36.6
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 4.1e-48 196.1 382 34.6
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 2.3e-46 190.3 319 40.8
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 6.6e-46 188.7 318 40.3
BcaB05g23770 Brassica carinata HOM05D000283 ORTHO05D004861 1.9e-45 187.2 252 48.8
BcaB04g19121 Brassica carinata HOM05D000283 ORTHO05D004861 1.7e-41 174.1 245 47.3
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 2.1e-36 157.1 400 28.8
TPR.G40391 Trifolium pratense HOM05D000283 ORTHO05D004861 2.1e-36 157.1 142 59.9
CBR_g863 Chara braunii HOM05D000283 ORTHO05D004861 1.9e-32 144.1 210 41.0
TPR.G10404 Trifolium pratense HOM05D000283 ORTHO05D004861 5.1e-30 136.0 276 36.2
CSS0043771 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 5.4e-24 115.9 214 37.4
BcaC08g44723 Brassica carinata HOM05D000283 ORTHO05D004861 6.0e-23 112.5 67 80.6
CSS0031096 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.3e-22 111.3 214 36.4
CSS0033958 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.3e-22 111.3 214 36.4
THA.LOC104810168 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 3.9e-22 109.8 96 57.3
Actinidia29196 Actinidia chinensis HOM05D000283 ORTHO05D004861 5.6e-21 105.9 223 35.4
Potri.010G213950 Populus trichocarpa HOM05D000283 ORTHO05D004861 8.1e-20 102.1 64 71.9
MBI15_g43999_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 2.0e-18 97.4 218 33.9
SHI28210 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-16 91.7 319 26.6
BcaC08g44722 Brassica carinata HOM05D000283 ORTHO05D032771 2.4e-16 90.5 56 82.1
Manes.03G138849 Manihot esculenta HOM05D000283 ORTHO05D004861 1.2e-15 88.2 76 56.6
MBI08_g12332_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 4.6e-15 86.3 81 61.7
Haze_27231 Corylus avellana HOM05D000283 ORTHO05D004861 7.9e-15 85.5 244 27.0
Manes.03G138852 Manihot esculenta HOM05D000283 ORTHO05D004861 7.9e-15 85.5 76 55.3
C06p22610 Brassica napus HOM05D000283 ORTHO05D004861 5.1e-14 82.8 51 78.4
RcHm_v2.0_Chr5g0057291 Rosa chinensis HOM05D000283 ORTHO05D004861 6.7e-14 82.4 127 44.1
Cre03.g144867 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D004861 7.4e-13 79.0 230 31.3
BcaC07g39824 Brassica carinata HOM05D000283 ORTHO05D032771 1.4e-11 74.7 49 83.7
C06p22600 Brassica napus HOM05D000283 ORTHO05D004861 7.6e-10 68.9 49 77.6
CAN.G786.34 Capsicum annuum HOM05D000283 ORTHO05D004861 6.5e-09 65.9 78 46.2
Pp3c6_17870 Physcomitrium patens HOM05D002845 ORTHO05D003180 1.1e-08 65.1 297 21.5
COL.COLO4_11669 Corchorus olitorius HOM05D002845 ORTHO05D003180 2.5e-08 63.9 223 22.4
Oeu059814.1 Olea europaea HOM05D002845 ORTHO05D003180 2.5e-08 63.9 293 22.5
C08p30300 Brassica napus HOM05D000283 ORTHO05D004861 5.5e-08 62.8 55 65.5
QL06p037620 Quercus lobata HOM05D002845 ORTHO05D003180 7.1e-08 62.4 221 23.5
Sabra15G0141800 Salix brachista HOM05D002845 ORTHO05D003180 1.6e-07 61.2 223 22.0
Thecc.01G082400 Theobroma cacao HOM05D002845 ORTHO05D003180 1.6e-07 61.2 223 22.4
ClCG01G018120 Citrullus lanatus HOM05D002845 ORTHO05D003180 2.7e-07 60.5 222 22.1
Manes.12G120400 Manihot esculenta HOM05D002845 ORTHO05D003180 6.0e-07 59.3 223 20.6
Cpa.g.sc129.25 Carica papaya HOM05D002845 ORTHO05D003180 1.0e-06 58.5 324 19.1
Sed0001884 Sechium edule HOM05D002845 ORTHO05D003180 1.0e-06 58.5 223 22.4
Cfa006819 Carpinus fangiana HOM05D002845 ORTHO05D003180 1.3e-06 58.2 221 22.6
Haze_03941 Corylus avellana HOM05D002845 ORTHO05D003180 1.3e-06 58.2 221 22.6
Prupe.6G210700 Prunus persica HOM05D002845 ORTHO05D003180 1.3e-06 58.2 221 23.1
GSVIVG01038533001 Vitis vinifera HOM05D002845 ORTHO05D003180 1.8e-06 57.8 221 20.8
Duzib264G0768 Durio zibethinus HOM05D002845 ORTHO05D003180 3.0e-06 57.0 223 20.6
Gohir.D03G033800 Gossypium hirsutum HOM05D002845 ORTHO05D003180 3.9e-06 56.6 223 19.7
Manes.13G104800 Manihot esculenta HOM05D002845 ORTHO05D003180 3.9e-06 56.6 223 21.1
MD15G1305600 Malus domestica HOM05D002845 ORTHO05D003180 5.1e-06 56.2 220 21.8
SHI28208 Sapria himalayana HOM05D000283 ORTHO05D004861 5.1e-06 56.2 37 73.0
Gohir.A02G146700 Gossypium hirsutum HOM05D002845 ORTHO05D003180 6.7e-06 55.8 223 19.7
Potri.012G127300 Populus trichocarpa HOM05D002845 ORTHO05D003180 6.7e-06 55.8 225 20.4


User provided reference genes

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