Gene: Sopen04g005260

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g005260
  • Transcript Identifier Sopen04g005260.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 3600248-3610772 : negative

Gene Family Information

  • ID HOM05D000283
  • #Genes/#Species 1540/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g005260.1

Descriptions

  • Description LisH/CRA/RING-U-box domains-containing protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain , CTLH, C-terminal LisH motif , LisH dimerisation motif , Ran binding protein-like, CRA domain | BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0003677
ISO
PLAZA Homology (enrichment)DNA binding HOM05D000283
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G55070
GO:0046982
ISO
PLAZA Homology (enrichment)protein heterodimerization activity HOM05D000283

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G55070
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G55070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027714 Protein Fyv10/E3 ubiquitin-protein transferase MAEA
IPR013144 CRA domain
IPR024964 CTLH/CRA C-terminal to LisH motif domain
IPR045098 Fyv10 family
IPR006595 CTLH, C-terminal LisH motif
Mapman id Description
19.2.1.3.1.9 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.component GID9