Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03786 Brassica carinata HOM05D002411 ORTHO05D093853 1.2e-36 156.0 77 100.0
C04p20250 Brassica napus HOM05D002411 ORTHO05D002564 2.9e-11 71.6 78 62.8
Thhalv10017204m.g Eutrema salsugineum HOM05D002411 ORTHO05D002564 2.5e-10 68.6 75 64.0
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 9.4e-10 66.6 75 62.7
Sp4g12840 Schrenkiella parvula HOM05D002411 ORTHO05D002564 9.4e-10 66.6 75 62.7
BcaB02g10311 Brassica carinata HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
BcaC02g11111 Brassica carinata HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
BcaC02g11115 Brassica carinata HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
A05p15200 Brassica napus HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
BolC4t23563H Brassica oleracea HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
BraA05t20438Z Brassica rapa HOM05D002411 ORTHO05D002564 1.2e-09 66.2 75 61.3
AT1G06960 Arabidopsis thaliana HOM05D002411 ORTHO05D002564 1.6e-09 65.9 75 58.7
Eucgr.B04011 Eucalyptus grandis HOM05D002411 ORTHO05D002564 1.6e-09 65.9 75 61.3
AL4G25110 Arabidopsis lyrata HOM05D002411 ORTHO05D002564 2.1e-09 65.5 75 61.3
MELO3C020490.2 Cucumis melo HOM05D002411 ORTHO05D002564 2.1e-09 65.5 75 61.3
CsaV3_1G004710 Cucumis sativus L. HOM05D002411 ORTHO05D002564 2.1e-09 65.5 75 61.3
CARHR006630 Cardamine hirsuta HOM05D002411 ORTHO05D002564 2.7e-09 65.1 75 60.0
C03p24180 Brassica napus HOM05D000218 ORTHO05D000125 3.6e-09 64.7 46 76.1
Carub.0001s0625 Capsella rubella HOM05D002411 ORTHO05D002564 3.6e-09 64.7 75 58.7
Sed0000863 Sechium edule HOM05D002411 ORTHO05D002564 3.6e-09 64.7 75 60.0
Cfa011789 Carpinus fangiana HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 57.3
Ca_05678_v3 Cicer arietinum L. HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 58.7
Haze_24425 Corylus avellana HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 57.3
Lsat_1_v5_gn_9_14560 Lactuca sativa HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 60.0
Lalb_Chr10g0103651 Lupinus albus HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 60.0
Prupe.6G046700 Prunus persica HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 61.3
RcHm_v2.0_Chr5g0071861 Rosa chinensis HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 61.3
Sed0023347 Sechium edule HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 60.0
GSVIVG01024622001 Vitis vinifera HOM05D002411 ORTHO05D002564 4.6e-09 64.3 75 60.0
EL10Ac7g15874 Beta vulgaris HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 58.7
AUR62009712 Chenopodium quinoa HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 58.7
AUR62036233 Chenopodium quinoa HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 58.7
Ciclev10002361m.g Citrus clementina HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 60.0
FvH4_3g39900 Fragaria vesca HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 60.0
FAN11G0853 Fragaria x ananassa HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 60.0
FAN21G1180 Fragaria x ananassa HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 60.0
FAN25G2748 Fragaria x ananassa HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 60.0
Lalb_Chr04g0251891 Lupinus albus HOM05D002411 ORTHO05D002564 6.1e-09 63.9 71 63.4
TPR.G33710 Trifolium pratense HOM05D002411 ORTHO05D002564 6.1e-09 63.9 75 58.7
VMungo0647G1194 Vigna mungo HOM05D002411 ORTHO05D002564 6.1e-09 63.9 78 56.4
CANSAT54G2102 Cannabis sativa HOM05D002411 ORTHO05D002564 7.9e-09 63.5 75 61.3
Cpa.g.sc2.341 Carica papaya HOM05D002411 ORTHO05D002564 7.9e-09 63.5 75 60.0
Nitab4.5_0002768g0060 Nicotiana tabacum HOM05D002411 ORTHO05D002564 7.9e-09 63.5 75 57.3
Oeu064675.1 Olea europaea HOM05D002411 ORTHO05D002564 7.9e-09 63.5 75 57.3
AT2G30260 Arabidopsis thaliana HOM05D002411 ORTHO05D002564 1.0e-08 63.2 75 60.0
Carub.0004s1142 Capsella rubella HOM05D002411 ORTHO05D002564 1.0e-08 63.2 75 60.0
ECA247G1877 Erigeron canadensis HOM05D002411 ORTHO05D002564 1.0e-08 63.2 75 60.0
Phvul.008G251100 Phaseolus vulgaris HOM05D002411 ORTHO05D002564 1.0e-08 63.2 75 58.7
SalBow2G0104 Salvia bowleyana HOM05D002411 ORTHO05D002564 1.0e-08 63.2 75 57.3
Ah.08g215380 Amaranthus hybridus HOM05D002411 ORTHO05D002564 1.4e-08 62.8 71 59.2
Glyma.02G232800 Glycine max HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 57.3
Gohir.A03G024900 Gossypium hirsutum HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 58.7
Gohir.D03G143600 Gossypium hirsutum HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 58.7
Gorai.003G150900 Gossypium raimondii HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 58.7
Manes.02G212020 Manihot esculenta HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 58.7
Medtr5g074430 Medicago truncatula HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 57.3
Nn2g11044 Nelumbo nucifera HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 60.0
Sopen06g033750 Solanum pennellii HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 56.0
PGSC0003DMG400030459 Solanum tuberosum HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 57.3
TWI31G1104 Tripterygium wilfordii HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 60.0
TAR623G1653 Trochodendron aralioides HOM05D002411 ORTHO05D002564 1.4e-08 62.8 75 60.0
CiPaw.13G068000 Carya illinoinensis HOM05D002411 ORTHO05D002564 1.8e-08 62.4 75 57.3
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 1.8e-08 62.4 75 58.7
FAN16G2062 Fragaria x ananassa HOM05D002411 ORTHO05D002564 1.8e-08 62.4 75 58.7
Psat2g054400 Pisum sativum HOM05D002411 ORTHO05D002564 1.8e-08 62.4 75 56.0
MSTRG.12693 Avicennia marina HOM05D002411 ORTHO05D002564 2.3e-08 62.0 75 57.3
Glyma.14G200400 Glycine max HOM05D002411 ORTHO05D002564 2.3e-08 62.0 75 56.0
HanXRQChr08g0228511 Helianthus annuus HOM05D002411 ORTHO05D002564 2.3e-08 62.0 75 58.7
Potri.013G153700 Populus trichocarpa HOM05D002411 ORTHO05D002564 2.3e-08 62.0 75 58.7
Hund05046 Selenicereus undatus HOM05D002411 ORTHO05D002564 2.3e-08 62.0 75 57.3
Actinidia34482 Actinidia chinensis HOM05D002411 ORTHO05D002564 3.0e-08 61.6 75 57.3
Lj2A1095G43 Lonicera japonica HOM05D002411 ORTHO05D002564 3.0e-08 61.6 75 57.3
Potri.019G121400 Populus trichocarpa HOM05D002411 ORTHO05D002564 3.0e-08 61.6 75 58.7
Rhsim13G0063100 Rhododendron simsii HOM05D002411 ORTHO05D002564 3.0e-08 61.6 75 58.7
THA.LOC104817610 Tarenaya hassleriana HOM05D002411 ORTHO05D002564 3.0e-08 61.6 75 57.3
arahy.Tifrunner.gnm1.ann1.1RMK4W Arachis hypogaea HOM05D002411 ORTHO05D002564 3.9e-08 61.2 75 58.7
arahy.Tifrunner.gnm1.ann1.77NVK8 Arachis hypogaea HOM05D002411 ORTHO05D002564 3.9e-08 61.2 75 58.7
vmacro14624 Vaccinium macrocarpon HOM05D002411 ORTHO05D002564 3.9e-08 61.2 75 58.7
HPP92_009919 Vanilla planifolia HOM05D002411 ORTHO05D002564 3.9e-08 61.2 75 58.7
CSS0007031 Camellia sinensis var. sinensis HOM05D002411 ORTHO05D002564 5.1e-08 60.8 75 57.3
CSS0048083 Camellia sinensis var. sinensis HOM05D002411 ORTHO05D002564 5.1e-08 60.8 75 57.3
Dinv28703 Davidia involucrata HOM05D002411 ORTHO05D002564 5.1e-08 60.8 75 57.3
QL01p025860 Quercus lobata HOM05D002411 ORTHO05D002564 5.1e-08 60.8 75 56.0
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 5.1e-08 60.8 75 57.3
Migut.N00753 Erythranthe guttata HOM05D002411 ORTHO05D002564 6.7e-08 60.5 75 56.0
Peaxi162Scf00390g00531 Petunia axillaris HOM05D002411 ORTHO05D002564 6.7e-08 60.5 75 56.0
SGA_v2.0_scaffold146G36114 Striga asiatica HOM05D002411 ORTHO05D002564 8.8e-08 60.1 75 56.0
Atru.chr1.2579 Acer truncatum HOM05D002411 ORTHO05D002564 1.1e-07 59.7 75 57.3
Actinidia23854 Actinidia chinensis HOM05D002411 ORTHO05D002564 1.1e-07 59.7 75 56.0
unitig_60.g25559 Utricularia gibba HOM05D002411 ORTHO05D002564 1.1e-07 59.7 75 54.7
ATR0594G043 Amborella trichopoda HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 56.0
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 56.0
LjContig00141g0023873 Lotus japonicus HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 56.0
PSO170G5526 Papaver somniferum HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 57.3
Sc21g0004970 Simmondsia chinensis HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 54.7
TWI79G0111 Tripterygium wilfordii HOM05D002411 ORTHO05D002564 1.5e-07 59.3 75 58.7
Hma1.2p1_1421F.1_g282410 Hydrangea macrophylla HOM05D002411 ORTHO05D002564 3.3e-07 58.2 75 56.0
PSO017G5058 Papaver somniferum HOM05D002411 ORTHO05D002564 3.3e-07 58.2 75 56.0
Aqoxy4G02180 Aquilegia oxysepala HOM05D002411 ORTHO05D002564 4.4e-07 57.8 75 53.3
Rhsim01G0241200 Rhododendron simsii HOM05D002411 ORTHO05D002564 4.4e-07 57.8 75 54.7
Dinv09682 Davidia involucrata HOM05D002411 ORTHO05D002564 5.7e-07 57.4 75 56.0
BcaC02g11112 Brassica carinata HOM05D002411 ORTHO05D002564 7.4e-07 57.0 67 56.7
DCAR_005705 Daucus carota HOM05D002411 ORTHO05D002564 7.4e-07 57.0 75 53.3
Os03g0298800 Oryza sativa ssp. japonica HOM05D002411 ORTHO05D002564 2.2e-06 55.5 75 50.7
CDE06G1936 Ceratophyllum demersum HOM05D002411 ORTHO05D002564 2.8e-06 55.1 70 55.7


User provided reference genes

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