Gene: PGSC0003DMG400030459

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400030459
  • Transcript Identifier PGSC0003DMT400078262
  • Gene Type Coding gene
  • Location ST4.03ch06 : 57521413-57526005 : negative

Gene Family Information

  • ID HOM05D002411
  • #Genes/#Species 281/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37453612
  • id PGSC0003DMG400030459.v4.03
  • uniprot M1CZR5

Descriptions

  • Description Spliceosomal protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G06960
GO:0000354
ISO
PLAZA Integrative Orthologycis assembly of pre-catalytic spliceosome AT2G30260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G30260
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT2G30260
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G30260
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G30260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.1.2.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).protein factor (U2B)