Gene: vmacro14624

General Information

Structural Information

Species Vaccinium macrocarpon
Gene Identifier vmacro14624
Transcript Identifier vmacro14624-RA
Gene Type Coding gene
Location chr7_Vaccinium_macrocarpon_Stevens_v1 : 29217874-29224446 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002411
#Genes/#Species 281/98
Phylogenetic origin

ID ORTHO05D002564
#Genes/#Species 279/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id vmacro14624_Vaccinium_macrocarpon_Stevens_v1

Descriptions

Short descriptions
Ortholog descriptions

Description Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX=3702)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009631	ISO	PLAZA Integrative Orthology	cold acclimation	AT1G06960
GO:0000354	ISO	PLAZA Integrative Orthology	cis assembly of pre-catalytic spliceosome	AT2G30260

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT2G30260
GO:0015030	ISO	PLAZA Integrative Orthology	Cajal body	AT2G30260
GO:0005686	ISO	PLAZA Integrative Orthology	U2 snRNP	AT2G30260
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT2G30260
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT2G30260

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

Mapman id	Description
16.2.1.2.2	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).protein factor (U2B)