Gene: AT1G06960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G06960
  • Transcript Identifier AT1G06960.1
  • Gene Type Coding gene
  • Location Chr1 : 2135930-2137533 : positive

Gene Family Information

  • ID HOM05D002411
  • #Genes/#Species 281/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G06960.1
  • uniprot Q8H1S6

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 815; Fungi - 369; Plants - 285; Viruses - 1; Other Eukaryotes - 192 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0009631
IMP
Gene Ontologycold acclimation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0015030
IEA
GOA DatabaseCajal body
GO:0015030
IDA
Gene OntologyCajal body3
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
ISS
Gene Ontologynucleoplasm
GO:0005686
IDA
IBA
Gene OntologyU2 snRNP1 4
GO:0005730
ISS
Gene Ontologynucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.1.2.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).protein factor (U2B)