Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 0.0e+00 1229.5 635 100.0
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.8e-271 939.1 636 76.4
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.5e-258 894.0 627 74.2
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.9e-257 892.5 625 74.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 3.8e-250 868.2 631 71.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 6.3e-245 850.9 625 72.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.6e-243 846.3 625 71.8
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.6e-243 846.3 625 71.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.3e-239 832.4 632 70.4
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 4.8e-237 824.7 635 69.3
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.1e-236 821.6 629 69.3
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 2.7e-235 818.9 637 69.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.2e-233 812.0 632 68.8
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.0e-231 807.0 634 67.7
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.0e-231 805.1 627 67.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.6e-230 802.4 627 68.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.2e-227 793.5 634 67.7
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.5e-227 792.0 636 66.5
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 3.5e-227 792.0 622 68.5
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.5e-227 791.6 647 65.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.5e-227 791.6 632 67.6
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 7.8e-227 790.8 639 66.8
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.3e-225 785.0 632 66.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 3.6e-224 781.9 633 66.5
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-223 780.4 632 66.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-222 776.2 632 66.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.6e-222 775.8 632 66.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.6e-222 775.8 632 66.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.4e-222 775.0 636 66.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.7e-222 774.6 632 65.8
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 5.7e-222 774.6 634 66.4
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.2e-221 772.7 622 67.7
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 7.3e-217 757.7 643 65.3
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.6e-216 756.5 635 62.4
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.1e-216 756.1 634 65.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.1e-216 756.1 635 63.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.7e-216 755.0 628 63.1
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.1e-215 753.8 638 64.6
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 6.8e-215 751.1 632 63.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 8.9e-215 750.7 617 66.5
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.6e-214 749.2 633 64.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 7.5e-214 747.7 634 62.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.3e-213 746.9 636 63.5
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.9e-213 745.7 600 66.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 8.3e-213 744.2 640 63.1
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.0e-211 739.6 634 63.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.7e-211 739.2 642 63.6
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.3e-210 736.9 633 63.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.3e-210 736.1 630 62.1
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.5e-209 733.4 606 63.9
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.9e-209 733.0 613 63.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.3e-209 731.9 639 61.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.6e-209 731.5 644 65.4
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 7.3e-209 731.1 627 62.2
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.8e-208 729.2 632 64.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.7e-208 728.4 632 63.6
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.2e-208 728.0 633 62.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.2e-208 728.0 633 62.4
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.4e-207 726.9 643 63.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.3e-207 726.1 633 62.6
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 8.9e-207 724.2 627 62.2
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.2e-206 723.8 641 64.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.5e-206 721.1 625 62.2
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 7.5e-206 721.1 626 61.7
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 7.5e-206 721.1 642 63.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.7e-205 719.9 603 63.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.7e-205 718.8 637 62.8
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-204 716.5 632 63.1
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.9e-204 716.5 594 64.6
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.2e-204 715.7 634 62.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 4.1e-204 715.3 603 63.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 5.4e-204 714.9 632 62.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.2e-204 714.1 635 62.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 9.2e-204 714.1 603 63.2
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 9.2e-204 714.1 634 61.4
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.6e-203 713.4 632 62.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.6e-203 711.8 648 61.3
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.9e-202 708.8 631 61.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.6e-202 708.0 603 62.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.5e-201 706.8 634 62.5
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.3e-201 705.7 641 61.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-200 703.7 639 60.7
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-200 703.7 561 66.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.6e-200 702.2 627 60.4
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-198 697.2 642 60.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.4e-198 695.3 642 60.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.4e-198 695.3 642 60.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.9e-197 691.8 660 59.4
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.4e-196 688.3 642 60.1
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.2e-195 687.2 642 60.0
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-195 686.8 637 59.5
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.5e-195 685.6 633 61.1
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 4.6e-195 685.3 635 58.3
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.0e-194 684.1 637 59.2
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.7e-194 683.3 649 59.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 8.7e-194 681.0 633 60.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-193 680.2 635 59.4
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.5e-193 680.2 638 60.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.3e-193 678.7 647 59.5
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 6.2e-192 674.9 632 60.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.0e-186 657.5 527 67.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.2e-181 639.8 630 56.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.4e-177 624.8 636 56.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.1e-176 623.2 634 57.1
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.4e-175 620.5 548 61.7
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.4e-172 610.5 550 62.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.1e-167 592.8 644 52.5
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-157 560.8 636 52.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.7e-153 545.4 642 54.0
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.5e-150 537.3 605 51.7
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-148 531.2 646 49.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 5.5e-148 528.9 648 49.1
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.5e-145 520.8 631 48.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.4e-145 519.2 644 47.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.2e-144 516.9 612 51.1
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.1e-143 514.6 544 53.5
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.4e-135 486.9 482 58.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.5e-129 467.6 401 66.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-124 451.1 538 49.8
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.9e-124 450.7 536 51.3
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.3e-116 423.3 542 49.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.5e-113 414.5 453 55.6
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-111 407.5 438 53.9
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.2e-110 404.8 339 66.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.7e-104 383.3 668 39.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-99 366.7 399 55.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.0e-99 365.5 389 56.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.8e-98 364.4 662 37.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-91 341.7 287 62.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-87 327.0 248 67.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.0e-86 322.8 460 45.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 3.9e-85 320.1 241 68.9
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.8e-81 306.2 604 35.6
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-73 282.0 362 48.6
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.4e-73 280.4 362 48.3
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.1e-70 271.2 582 35.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-69 268.1 198 68.2
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.3e-69 267.7 362 47.0
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-65 255.0 149 76.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.4e-64 249.6 812 31.2
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-47 194.9 158 65.8
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 3.2e-47 194.1 409 39.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.6e-41 174.5 595 28.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 7.7e-41 172.9 596 27.5
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.2e-38 165.6 537 29.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.3e-36 157.1 165 49.7
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 8.2e-35 152.9 277 41.9
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 6.1e-22 110.2 84 66.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.3e-21 108.2 60 83.3
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.9e-21 107.5 81 64.2
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 5.7e-20 103.6 256 34.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 4.7e-14 84.0 69 66.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.7e-08 65.5 128 38.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 6.5e-08 63.5 37 78.4
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.5e-07 62.4 43 72.1


User provided reference genes

Program Settings