Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2523 Acer truncatum HOM05D000104 ORTHO05D017166 1.1e-88 330.1 179 100.0
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 1.4e-32 143.7 177 50.3
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 4.8e-25 118.6 142 49.3
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 2.4e-24 116.3 184 42.4
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 3.1e-24 115.9 175 46.3
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.1e-24 115.5 184 43.5
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 9.1e-24 114.4 95 64.2
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 1.3e-22 110.5 186 44.1
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 1.3e-22 110.5 184 42.4
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 8.5e-22 107.8 183 43.2
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 1.1e-21 107.5 171 46.2
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 1.9e-21 106.7 138 45.7
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 2.5e-21 106.3 162 41.4
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 3.2e-21 105.9 206 40.8
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 5.5e-21 105.1 140 45.7
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 1.2e-20 104.0 124 45.2
Actinidia13201 Actinidia chinensis HOM05D000104 ORTHO05D017166 3.6e-20 102.4 163 44.2
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 6.1e-20 101.7 177 37.3
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 1.8e-19 100.1 175 43.4
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 3.0e-19 99.4 108 48.1
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 4.0e-19 99.0 180 40.6
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 4.0e-19 99.0 138 45.7
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 4.0e-19 99.0 157 40.1
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 5.2e-19 98.6 145 45.5
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 6.8e-19 98.2 173 40.5
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 2.6e-18 96.3 165 37.6
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 3.4e-18 95.9 136 45.6
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 4.4e-18 95.5 178 38.8
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.4e-18 95.5 144 43.1
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 4.4e-18 95.5 143 42.7
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 7.5e-18 94.7 197 35.0
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 7.5e-18 94.7 173 37.6
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 1.7e-17 93.6 173 39.3
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 2.8e-17 92.8 144 40.3
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 4.8e-17 92.0 133 38.3
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 4.8e-17 92.0 172 39.5
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 8.3e-17 91.3 165 37.0
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 1.1e-16 90.9 137 40.9
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.8e-16 90.1 130 38.5
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 2.4e-16 89.7 134 40.3
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 2.4e-16 89.7 139 40.3
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 3.1e-16 89.4 138 42.0
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 4.1e-16 89.0 135 40.7
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.1e-16 89.0 100 44.0
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 7.0e-16 88.2 142 35.9
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 1.2e-15 87.4 155 38.1
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 2.7e-15 86.3 173 36.4
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 3.5e-15 85.9 180 36.7
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 3.5e-15 85.9 139 42.4
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 4.5e-15 85.5 126 36.5
HanXRQChr07g0188191 Helianthus annuus HOM05D000104 ORTHO05D017166 4.5e-15 85.5 80 50.0
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 4.5e-15 85.5 81 51.9
VMungo1127G1155 Vigna mungo HOM05D037023 ORTHO05D017166 7.7e-15 84.7 105 48.6
Rhsim02G0208100 Rhododendron simsii HOM05D000001 ORTHO05D009891 1.3e-14 84.0 151 41.1
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 2.9e-14 82.8 97 44.3
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 3.8e-14 82.4 155 39.4
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 1.9e-13 80.1 101 43.6
COL.COLO4_18936 Corchorus olitorius HOM05D000104 ORTHO05D003467 2.5e-13 79.7 146 39.7
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.5e-13 79.7 103 40.8
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 2.5e-13 79.7 145 34.5
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 3.2e-13 79.3 145 35.2
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 3.2e-13 79.3 145 36.6
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.2e-13 79.0 138 41.3
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 7.2e-13 78.2 168 38.7
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 7.2e-13 78.2 176 35.2
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 7.2e-13 78.2 140 38.6
Gohir.D13G187950 Gossypium hirsutum HOM05D000104 ORTHO05D017166 9.4e-13 77.8 79 50.6
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 1.2e-12 77.4 140 37.1
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.6e-12 77.0 96 42.7
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 1.6e-12 77.0 142 38.7
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 1.6e-12 77.0 149 30.9
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 3.6e-12 75.9 97 40.2
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 4.7e-12 75.5 89 40.4
VMungo1383G0634 Vigna mungo HOM05D037023 ORTHO05D017166 4.7e-12 75.5 120 38.3
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 6.1e-12 75.1 168 31.5
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 8.0e-12 74.7 138 41.3
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 8.0e-12 74.7 142 42.3
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 1.0e-11 74.3 81 45.7
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 1.4e-11 73.9 137 38.7
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.4e-11 73.9 166 39.2
VMungo0720G0250 Vigna mungo HOM05D003344 ORTHO05D003981 1.4e-11 73.9 93 45.2
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 1.8e-11 73.6 140 39.3
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 3.0e-11 72.8 145 33.1
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 3.0e-11 72.8 134 38.1
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 3.0e-11 72.8 131 33.6
VMungo1215G0912 Vigna mungo HOM05D037023 ORTHO05D017166 3.0e-11 72.8 83 43.4
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 4.0e-11 72.4 155 33.5
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 4.0e-11 72.4 140 34.3
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 4.0e-11 72.4 140 34.3
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.0e-11 72.4 137 38.7
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 4.0e-11 72.4 99 40.4
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 6.8e-11 71.6 121 39.7
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 6.8e-11 71.6 138 37.0
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 8.8e-11 71.2 146 31.5
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 8.8e-11 71.2 167 29.3
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 1.2e-10 70.9 124 35.5
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.5e-10 70.5 137 38.7
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.0e-10 70.1 137 38.7
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 2.0e-10 70.1 165 38.2
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 3.4e-10 69.3 151 31.8
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 3.4e-10 69.3 139 34.5
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 3.4e-10 69.3 146 34.2
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 3.4e-10 69.3 167 28.7
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 4.4e-10 68.9 135 34.1
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 7.5e-10 68.2 117 40.2
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 9.8e-10 67.8 117 39.3
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 1.3e-09 67.4 87 37.9
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 1.3e-09 67.4 128 34.4
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 2.2e-09 66.6 132 33.3
Nitab4.5_0000486g0100 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.2e-09 66.6 108 38.9
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.2e-09 66.6 108 38.0
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 4.9e-09 65.5 129 33.3
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 8.3e-09 64.7 140 34.3
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.1e-08 64.3 147 32.7
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 1.1e-08 64.3 123 39.0
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 1.4e-08 63.9 128 33.6
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.8e-08 63.5 78 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1528 Anthoceros agrestis HOM05D000104 ORTHO05D003467 7.0e-08 61.6 118 34.7
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 7.0e-08 61.6 81 40.7
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 9.1e-08 61.2 144 29.9
Oeu000761.1 Olea europaea HOM05D000104 ORTHO05D017166 9.1e-08 61.2 160 31.2
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 9.1e-08 61.2 118 34.7
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.6e-07 60.5 104 35.6
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 2.0e-07 60.1 136 27.9
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 3.5e-07 59.3 129 29.5
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 7.7e-07 58.2 81 39.5
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 2.3e-06 56.6 100 36.0
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 2.9e-06 56.2 142 31.0
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 3.8e-06 55.8 145 29.0


User provided reference genes

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