Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 0.0e+00 1406.3 699 100.0
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 8.4e-283 976.9 686 73.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 9.0e-261 903.7 690 67.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 5.7e-255 884.4 690 66.8
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 3.7e-254 881.7 690 66.7
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 2.1e-249 865.9 677 65.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 1.1e-247 860.1 704 64.2
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 1.5e-247 859.8 685 65.0
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 8.2e-246 854.0 696 63.5
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 1.8e-245 852.8 678 64.6
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 3.8e-243 845.1 691 65.3
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 9.7e-239 830.5 650 66.3
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.5e-234 816.6 689 63.6
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 7.2e-234 814.3 689 63.4
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 6.1e-233 811.2 691 62.8
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 6.1e-233 811.2 691 62.7
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 1.3e-230 803.5 721 59.5
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 2.8e-230 802.4 689 62.8
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 6.3e-230 801.2 699 60.8
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 1.0e-224 783.9 719 59.7
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.0e-224 782.3 719 59.2
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 1.3e-222 776.9 689 60.1
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.7e-222 775.4 718 58.6
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 6.3e-222 774.6 718 58.6
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.8e-221 773.1 719 58.7
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 3.1e-221 772.3 689 59.5
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 9.5e-218 760.8 689 60.5
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.1e-217 759.6 708 58.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 8.0e-217 757.7 680 62.1
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 8.9e-216 754.2 715 57.3
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 2.6e-215 752.7 692 60.1
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 1.1e-213 747.3 699 59.8
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 1.2e-212 743.8 694 59.1
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 5.9e-212 741.5 688 57.1
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 1.0e-211 740.7 695 57.0
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 1.7e-211 740.0 691 58.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 3.8e-211 738.8 695 56.8
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 6.6e-211 738.0 702 58.0
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 2.1e-209 733.0 680 59.0
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 2.3e-208 729.6 685 58.1
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.2e-207 727.2 688 57.1
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 5.8e-207 724.9 690 57.0
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 5.8e-207 724.9 677 58.3
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 3.7e-206 722.2 682 57.5
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 6.4e-206 721.5 696 57.2
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 6.0e-204 714.9 643 61.9
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 5.0e-203 711.8 696 56.6
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 6.6e-203 711.4 680 57.5
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 8.6e-203 711.1 676 57.4
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 1.5e-202 710.3 676 57.2
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 4.3e-202 708.8 699 56.4
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 2.3e-200 703.0 677 56.9
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 3.1e-200 702.6 684 56.7
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 8.9e-200 701.0 695 56.3
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 1.2e-199 700.7 678 56.9
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.5e-199 700.3 645 59.7
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 5.8e-199 698.4 678 56.8
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.2e-198 696.4 678 56.8
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 6.0e-196 688.3 677 55.8
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 2.3e-195 686.4 680 55.1
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 4.3e-194 682.2 678 55.5
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 5.2e-192 675.2 687 55.2
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 7.5e-191 671.4 719 52.7
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 6.4e-190 668.3 689 55.2
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 9.5e-186 654.4 644 57.3
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.4e-181 640.6 680 52.5
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 2.4e-181 639.8 679 53.6
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.5e-175 620.5 745 47.8
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 1.4e-173 614.0 725 49.8
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.8e-168 597.0 695 48.2
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 4.6e-164 582.4 752 46.7
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 7.9e-164 581.6 556 59.4
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 9.3e-157 558.1 714 48.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 3.0e-155 553.1 751 43.9
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 6.9e-152 542.0 718 46.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.3e-147 527.7 654 48.5
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 6.9e-144 515.4 461 62.7
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.8e-142 509.6 703 46.4
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.4e-141 507.7 604 51.8
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 5.5e-141 505.8 681 46.5
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 7.2e-141 505.4 706 47.0
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 1.8e-139 500.7 729 43.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 8.8e-139 498.4 701 45.6
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.5e-138 497.7 682 46.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 4.3e-138 496.1 591 51.6
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 1.3e-137 494.6 641 46.8
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 2.8e-137 493.4 735 43.7
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 4.1e-136 489.6 581 50.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.1e-133 481.5 468 56.6
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.4e-133 481.1 531 55.2
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 1.9e-133 480.7 676 44.7
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.5e-133 480.3 703 44.5
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 5.5e-133 479.2 679 44.8
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.6e-132 477.6 724 43.4
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 2.6e-127 460.3 490 56.5
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.1e-125 454.9 635 46.9
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 5.5e-125 452.6 773 41.4
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.6e-124 451.1 332 68.4
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 8.2e-121 438.7 671 42.6
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 5.9e-119 432.6 607 47.4
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.1e-112 411.8 716 41.2
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.5e-111 406.8 690 41.3
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 7.7e-111 405.6 448 53.1
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 1.0e-99 368.6 702 35.2
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.0e-91 340.1 447 47.7
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 1.0e-78 298.9 697 33.1
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.4e-75 288.5 484 35.5
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.1e-69 268.9 414 40.8
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.4e-59 235.3 209 63.2
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.1e-48 199.1 153 66.7
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 4.3e-29 134.0 92 75.0
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 6.3e-28 130.2 543 27.6
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 2.7e-23 114.8 114 53.5
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.2e-17 95.1 196 30.1
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-14 84.7 269 29.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 3.9e-14 84.3 193 29.5
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.0e-13 82.0 81 49.4
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.0e-13 82.0 64 54.7
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.1e-07 62.0 211 24.6
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.6e-07 61.2 193 25.9
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.7e-07 60.8 193 25.4
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.7e-07 60.8 253 25.3
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 6.1e-07 60.5 79 34.2
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 8.0e-07 60.1 193 25.4
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.0e-06 59.7 193 25.4
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-06 59.3 194 25.8
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 1.4e-06 59.3 114 25.4
SGA_v2.0_scaffold240G44129 Striga asiatica HOM05D005318 ORTHO05D006791 2.3e-06 58.5 221 22.6
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 5.2e-06 57.4 247 24.3


User provided reference genes

Program Settings