Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3187 Acer truncatum HOM05D002024 ORTHO05D007288 4.9e-180 634.4 333 100.0
Dinv05430 Davidia involucrata HOM05D002024 ORTHO05D007288 1.0e-81 307.8 295 57.6
Dinv39713 Davidia involucrata HOM05D002024 ORTHO05D007288 4.0e-81 305.8 303 55.8
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 2.6e-80 303.1 281 59.8
QL08p033036 Quercus lobata HOM05D002024 ORTHO05D007288 7.0e-78 295.0 287 59.9
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 2.3e-76 290.0 304 57.6
Ciclev10014176m.g Citrus clementina HOM05D002024 ORTHO05D007288 6.6e-76 288.5 294 57.1
Haze_12862 Corylus avellana HOM05D002024 ORTHO05D007288 1.1e-75 287.7 295 57.6
TAR627G0588 Trochodendron aralioides HOM05D002024 ORTHO05D007288 1.9e-75 287.0 294 56.1
TWI36G0154 Tripterygium wilfordii HOM05D002024 ORTHO05D007288 5.5e-75 285.4 284 58.5
Potri.002G229000 Populus trichocarpa HOM05D002024 ORTHO05D007288 2.1e-74 283.5 281 59.1
Prupe.3G217000 Prunus persica HOM05D002024 ORTHO05D007288 4.7e-74 282.3 298 55.7
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 5.2e-73 278.9 305 55.7
Cpa.g.sc87.78 Carica papaya HOM05D002024 ORTHO05D007288 8.9e-73 278.1 323 50.2
Rhsim06G0162700 Rhododendron simsii HOM05D002024 ORTHO05D007288 1.5e-72 277.3 298 54.7
vmacro12202 Vaccinium macrocarpon HOM05D002024 ORTHO05D007288 9.8e-72 274.6 293 54.6
CiPaw.04G116100 Carya illinoinensis HOM05D002024 ORTHO05D007288 2.2e-71 273.5 292 54.8
Gohir.D04G189200 Gossypium hirsutum HOM05D002024 ORTHO05D007288 3.7e-71 272.7 302 54.3
Gorai.012G184500 Gossypium raimondii HOM05D002024 ORTHO05D007288 3.7e-71 272.7 302 54.3
Actinidia09716 Actinidia chinensis HOM05D002024 ORTHO05D007288 8.3e-71 271.6 303 53.5
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 1.4e-70 270.8 283 54.1
COL.COLO4_27729 Corchorus olitorius HOM05D002024 ORTHO05D007288 9.2e-70 268.1 305 53.4
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 4.5e-69 265.8 278 52.5
CANSAT64G1657 Cannabis sativa HOM05D002024 ORTHO05D007288 1.0e-68 264.6 261 56.3
Lj8A125T72 Lonicera japonica HOM05D002024 ORTHO05D007288 2.3e-68 263.5 300 49.7
Actinidia27264 Actinidia chinensis HOM05D002024 ORTHO05D007288 3.9e-68 262.7 297 52.2
Nn1g03510 Nelumbo nucifera HOM05D002024 ORTHO05D007288 5.0e-68 262.3 290 51.7
Cc05_g04580 Coffea canephora HOM05D002024 ORTHO05D007288 6.6e-68 261.9 289 50.9
MD09G1109200 Malus domestica HOM05D002024 ORTHO05D007288 6.6e-68 261.9 282 54.3
Lj3g0021786 Lotus japonicus HOM05D002024 ORTHO05D007288 8.6e-68 261.5 267 55.4
Sabra02G0175000 Salix brachista HOM05D002024 ORTHO05D007288 8.6e-68 261.5 277 56.0
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 1.1e-67 261.2 280 54.3
CSS0021724 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D007288 1.5e-67 260.8 287 53.3
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 1.5e-67 260.8 288 55.9
RcHm_v2.0_Chr2g0159251 Rosa chinensis HOM05D002024 ORTHO05D007288 6.1e-66 255.4 287 53.3
arahy.Tifrunner.gnm1.ann1.3TL5KL Arachis hypogaea HOM05D002024 ORTHO05D007288 1.0e-65 254.6 285 52.3
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 4.0e-65 252.7 277 53.4
ClCG02G001940 Citrullus lanatus HOM05D002024 ORTHO05D007288 5.2e-65 252.3 276 52.9
Glyma.06G305900 Glycine max HOM05D002024 ORTHO05D007288 5.2e-65 252.3 282 53.5
arahy.Tifrunner.gnm1.ann1.FW4LSX Arachis hypogaea HOM05D002024 ORTHO05D007288 1.2e-64 251.1 285 51.2
FAN14G2536 Fragaria x ananassa HOM05D002024 ORTHO05D007288 1.5e-64 250.8 287 53.0
Sed0008958 Sechium edule HOM05D002024 ORTHO05D007288 2.0e-64 250.4 292 49.7
Sed0017029 Sechium edule HOM05D002024 ORTHO05D007288 2.6e-64 250.0 278 51.4
CARHR126240 Cardamine hirsuta HOM05D002024 ORTHO05D007288 5.8e-64 248.8 287 47.7
FAN05G4210 Fragaria x ananassa HOM05D002024 ORTHO05D007288 5.8e-64 248.8 285 51.6
FvH4_6g43150 Fragaria vesca HOM05D002024 ORTHO05D007288 1.3e-63 247.7 286 52.4
FAN02G4513 Fragaria x ananassa HOM05D002024 ORTHO05D007288 2.9e-63 246.5 285 51.2
Lalb_Chr19g0135891 Lupinus albus HOM05D002024 ORTHO05D007288 2.9e-63 246.5 282 52.1
MELO3C018818.2 Cucumis melo HOM05D002024 ORTHO05D007288 1.1e-62 244.6 277 52.3
CsaV3_7G003570 Cucumis sativus L. HOM05D002024 ORTHO05D007288 1.4e-62 244.2 272 51.8
Solyc07g052340.4 Solanum lycopersicum HOM05D002024 ORTHO05D007288 3.2e-62 243.0 285 50.5
Gohir.A04G144700 Gossypium hirsutum HOM05D002024 ORTHO05D007288 4.1e-62 242.7 282 52.5
TPR.G4605 Trifolium pratense HOM05D002024 ORTHO05D007288 1.6e-61 240.7 286 50.3
HanXRQChr16g0504911 Helianthus annuus HOM05D002024 ORTHO05D007288 2.7e-61 240.0 276 51.1
Sopen07g025960 Solanum pennellii HOM05D002024 ORTHO05D007288 2.7e-61 240.0 284 50.7
Migut.M00437 Erythranthe guttata HOM05D002024 ORTHO05D007288 3.5e-61 239.6 286 47.9
CAN.G1740.3 Capsicum annuum HOM05D002024 ORTHO05D007288 4.6e-61 239.2 284 50.4
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 4.6e-61 239.2 279 51.6
AL4G27810 Arabidopsis lyrata HOM05D002024 ORTHO05D007288 7.8e-61 238.4 292 45.5
Sp4g14790 Schrenkiella parvula HOM05D002024 ORTHO05D007288 1.3e-60 237.7 292 46.2
Hund06720 Selenicereus undatus HOM05D002024 ORTHO05D007288 1.3e-60 237.7 272 51.5
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 3.0e-60 236.5 277 47.3
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 3.0e-60 236.5 269 52.0
AT2G32415 Arabidopsis thaliana HOM05D002024 ORTHO05D007288 3.9e-60 236.1 292 46.2
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 6.6e-60 235.3 272 49.6
Ca_12394_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 8.6e-60 235.0 270 52.2
Carub.0004s1377 Capsella rubella HOM05D002024 ORTHO05D007288 1.1e-59 234.6 292 45.9
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 1.5e-59 234.2 275 46.9
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 3.3e-59 233.0 267 49.8
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 5.6e-59 232.3 274 48.5
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 5.6e-59 232.3 274 48.5
MBI18_g03588_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D007288 9.5e-59 231.5 256 53.5
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 2.1e-58 230.3 274 48.2
Manes.12G066500 Manihot esculenta HOM05D002024 ORTHO05D007288 3.6e-58 229.6 257 50.2
AUR62025026 Chenopodium quinoa HOM05D002024 ORTHO05D007288 8.0e-58 228.4 278 51.1
A05p13190 Brassica napus HOM05D002024 ORTHO05D007288 1.8e-57 227.3 265 49.4
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 3.1e-57 226.5 265 50.2
PSO541G4901 Papaver somniferum HOM05D002024 ORTHO05D007288 3.1e-57 226.5 292 47.3
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 4.0e-57 226.1 284 46.5
Aa31LG5G4860 Aethionema arabicum HOM05D002024 ORTHO05D007288 5.2e-57 225.7 291 47.4
BolC4t23275H Brassica oleracea HOM05D002024 ORTHO05D007288 1.2e-56 224.6 267 48.7
Lsat_1_v5_gn_7_92221 Lactuca sativa HOM05D002024 ORTHO05D007288 2.6e-56 223.4 282 46.1
CDE05G2902 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 1.7e-55 220.7 296 48.0
Ca_30385_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 6.4e-55 218.8 253 52.2
DCAR_019765 Daucus carota HOM05D002024 ORTHO05D007288 6.4e-55 218.8 335 43.6
Nitab4.5_0002137g0070 Nicotiana tabacum HOM05D002024 ORTHO05D007288 6.4e-55 218.8 262 51.5
SalBow7G2680 Salvia bowleyana HOM05D002024 ORTHO05D007288 6.4e-55 218.8 274 49.3
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 1.1e-54 218.0 267 51.3
Nitab4.5_0004417g0080 Nicotiana tabacum HOM05D002024 ORTHO05D007288 1.3e-52 211.1 263 48.7
Thhalv10016228m.g Eutrema salsugineum HOM05D002024 ORTHO05D007288 6.6e-52 208.8 273 45.4
Oeu019888.4 Olea europaea HOM05D002024 ORTHO05D007288 8.6e-52 208.4 248 50.8
Peaxi162Scf00007g00832 Petunia axillaris HOM05D002024 ORTHO05D007288 8.6e-52 208.4 265 47.9
PSO675G1279 Papaver somniferum HOM05D002024 ORTHO05D007288 1.9e-51 207.2 281 44.8
C04p17230 Brassica napus HOM05D002024 ORTHO05D007288 7.3e-51 205.3 251 47.8
unitig_899.g15271 Utricularia gibba HOM05D002024 ORTHO05D007288 2.8e-50 203.4 287 42.5
Zm00001eb322610 Zea mays HOM05D002024 ORTHO05D007288 4.0e-49 199.5 289 45.0
EL10Ac9g20670 Beta vulgaris HOM05D002024 ORTHO05D007288 5.4e-46 189.1 292 44.2
Os07g0513100 Oryza sativa ssp. japonica HOM05D002024 ORTHO05D007288 1.5e-43 181.0 289 42.6
Pp3c18_1700 Physcomitrium patens HOM05D002024 ORTHO05D007288 5.6e-43 179.1 269 44.6
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 7.3e-43 178.7 279 43.0
Mapoly0006s0210 Marchantia polymorpha HOM05D002024 ORTHO05D007288 4.6e-37 159.5 266 39.8
CBR_g39322 Chara braunii HOM05D002024 ORTHO05D007288 1.8e-33 147.5 301 33.2
FAN09G4217 Fragaria x ananassa HOM05D002024 ORTHO05D007288 2.4e-33 147.1 238 45.0
Glyma.12G098733 Glycine max HOM05D002024 ORTHO05D007288 5.3e-33 146.0 222 43.2
ECA238G0106 Erigeron canadensis HOM05D000014 ORTHO05D007288 1.6e-26 124.4 252 33.3
BcaC02g11322 Brassica carinata HOM05D002024 ORTHO05D007288 1.1e-25 121.7 123 55.3
CDE10G1161 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 1.9e-19 100.9 214 39.3
HPP92_014132 Vanilla planifolia HOM05D002024 ORTHO05D007288 1.2e-16 91.7 112 45.5
Hma1.2p1_0249F.1_g102286 Hydrangea macrophylla HOM05D002024 ORTHO05D007288 3.0e-12 77.0 43 90.7
Cre03.g145767 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 1.8e-09 67.8 75 42.7
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 1.3e-07 61.6 62 40.3


User provided reference genes

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