Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.2e-213 744.6 420 100.0
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 7.0e-176 620.9 420 83.6
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 8.6e-174 614.0 422 83.9
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.1e-171 605.5 420 81.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 3.1e-171 605.5 421 81.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 5.2e-171 604.7 421 82.9
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.0e-170 602.8 421 81.5
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.8e-170 601.3 418 80.1
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 9.8e-170 600.5 419 82.6
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.4e-168 594.7 424 76.9
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 4.6e-167 591.7 422 81.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 7.8e-167 590.9 421 81.5
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.3e-166 590.1 421 81.5
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-166 589.7 421 81.2
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.3e-166 589.3 421 81.2
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 5.0e-166 588.2 420 81.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.9e-165 586.3 424 80.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.9e-165 586.3 420 81.0
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 5.6e-165 584.7 423 77.5
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 7.3e-165 584.3 420 78.8
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-164 583.6 424 80.7
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.6e-164 583.2 420 80.0
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 8.1e-164 580.9 423 77.1
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 8.1e-164 580.9 419 78.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 3.1e-163 578.9 425 80.0
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.6e-162 575.9 421 79.8
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 4.4e-162 575.1 420 77.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 5.8e-162 574.7 417 80.3
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 8.3e-161 570.9 418 80.4
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.1e-160 570.5 431 71.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.4e-160 570.1 427 74.0
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.4e-160 570.1 422 78.7
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.9e-160 569.7 432 71.5
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 3.2e-160 568.9 427 73.8
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.2e-160 568.9 426 73.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 9.2e-160 567.4 420 79.0
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-159 566.2 429 73.9
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.1e-159 566.2 421 77.9
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 4.6e-159 565.1 427 76.8
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.3e-158 563.5 415 73.0
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.9e-158 562.0 420 77.6
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.6e-158 561.2 415 73.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.5e-157 559.3 421 77.9
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.5e-157 559.3 421 78.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.8e-156 555.8 419 76.6
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.8e-155 551.2 431 71.9
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 6.8e-155 551.2 421 72.9
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 8.9e-155 550.8 421 73.2
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.0e-154 549.7 418 77.3
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 7.6e-154 547.7 421 72.2
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.3e-153 547.0 422 74.9
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 8.4e-153 544.3 426 76.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.4e-152 541.6 424 75.0
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-151 540.4 415 70.8
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 7.8e-151 537.7 421 69.6
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.0e-150 537.3 397 78.1
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.3e-150 537.0 420 75.2
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.9e-149 533.1 418 77.3
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 2.8e-148 529.3 423 74.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 6.2e-148 528.1 424 72.2
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 5.2e-147 525.0 424 70.5
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 5.2e-147 525.0 422 73.9
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 9.9e-146 520.8 423 67.6
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 7.1e-144 514.6 399 70.9
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.7e-143 512.7 423 66.7
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.3e-142 510.4 421 65.6
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 9.0e-139 497.7 328 78.7
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 9.0e-139 497.7 421 64.4
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.2e-138 497.3 328 78.4
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.2e-138 497.3 419 70.6
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.5e-138 496.9 423 66.7
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.0e-138 496.5 423 69.7
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.8e-137 492.3 322 79.2
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 6.4e-137 491.5 325 78.2
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.4e-136 490.3 426 65.3
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.4e-136 490.3 399 69.7
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.1e-136 488.0 419 70.4
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.3e-136 487.6 437 68.0
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 9.3e-136 487.6 423 69.5
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 7.9e-135 484.6 422 64.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 3.0e-134 482.6 440 63.4
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.0e-134 482.6 428 68.5
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 5.1e-134 481.9 425 61.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.8e-132 475.3 425 69.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.1e-131 474.2 430 60.7
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 9.0e-131 471.1 329 75.4
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 2.6e-130 469.5 423 60.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.6e-130 469.5 391 72.9
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.4e-130 469.2 329 75.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 5.8e-130 468.4 329 75.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 5.8e-130 468.4 446 61.9
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 7.6e-130 468.0 426 62.4
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.1e-128 464.2 329 74.5
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.9e-128 463.4 414 62.3
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.1e-126 455.3 444 61.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.1e-125 454.1 414 62.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.9e-125 453.4 406 64.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.5e-125 453.0 425 63.3
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.3e-124 450.7 416 61.1
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.4e-123 446.4 416 61.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.5e-122 443.7 396 62.6
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.5e-113 411.8 379 61.7
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.5e-112 409.8 398 58.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 9.3e-112 407.9 380 60.5
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.2e-105 386.7 421 53.7
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.0e-102 377.9 455 57.1
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.8e-102 377.1 223 83.9
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.7e-100 370.5 290 69.7
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 6.9e-99 365.2 416 56.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.6e-95 354.0 420 51.4
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 4.4e-93 345.9 447 52.1
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.1e-91 339.3 290 65.5
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.0e-86 324.7 284 72.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.7e-82 310.1 271 60.9
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.7e-81 307.4 284 63.4
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 4.1e-75 286.2 160 87.5
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.5e-74 283.1 338 49.7
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.2e-71 274.6 167 81.4
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 4.7e-71 272.7 355 48.5
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-65 254.2 239 58.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 7.5e-61 238.8 139 85.6
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.3e-56 223.4 159 70.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.6e-55 219.9 115 91.3
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 3.7e-52 209.9 168 64.9
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 6.8e-46 189.1 159 61.6
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 2.0e-45 187.6 115 82.6
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 7.5e-45 185.7 125 74.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.9e-41 173.3 286 45.1
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-39 168.3 252 42.9
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 2.1e-39 167.5 156 53.2
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.5e-32 144.8 413 31.0
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.2e-27 127.1 114 58.8
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.1e-26 124.4 178 43.3
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 6.0e-26 122.9 157 45.9
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.0e-26 122.9 64 89.1
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-25 121.3 64 87.5
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.7e-25 121.3 64 87.5
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 3.0e-25 120.6 141 59.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.7e-25 119.0 64 85.9
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.3e-23 115.2 97 61.9
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.3e-23 115.2 79 73.4
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.4e-22 110.9 68 79.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.4e-21 107.1 66 78.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.5e-21 106.7 68 77.9
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.9e-20 104.0 161 42.9
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.3e-16 90.1 108 48.1
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 7.9e-10 69.3 49 73.5
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 2.5e-08 64.3 69 49.3
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 2.5e-08 64.3 69 49.3


User provided reference genes

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