Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 0.0e+00 1242.6 616 100.0
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 9.8e-251 870.2 636 70.4
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 2.6e-227 792.3 630 65.4
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 8.1e-221 770.8 629 63.4
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 1.3e-218 763.5 623 64.4
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 3.7e-218 761.9 620 64.0
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 5.1e-215 751.5 623 63.1
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 5.6e-214 748.0 650 60.9
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 4.7e-213 745.0 619 63.7
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 4.0e-212 741.9 710 56.1
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.5e-211 740.0 650 60.6
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 5.8e-211 738.0 642 60.9
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 1.3e-210 736.9 618 62.5
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 6.4e-210 734.6 646 61.0
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 1.4e-209 733.4 628 63.1
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 1.4e-209 733.4 619 62.7
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 3.5e-208 728.8 619 60.7
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 1.3e-207 726.9 630 61.6
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.0e-207 725.7 619 61.1
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 8.6e-207 724.2 624 62.3
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 4.7e-205 718.4 628 60.4
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 1.1e-204 717.2 631 60.9
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 4.4e-203 711.8 634 60.4
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 4.9e-202 708.4 626 60.4
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 1.1e-201 707.2 631 59.3
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 9.3e-201 704.1 632 61.1
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 1.2e-200 703.7 628 60.4
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 2.3e-199 699.5 629 59.5
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 9.6e-198 694.1 625 59.2
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.6e-197 693.3 626 59.3
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 2.8e-197 692.6 628 58.4
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 3.1e-196 689.1 629 59.1
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 2.0e-195 686.4 631 58.6
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 5.4e-193 678.3 627 58.4
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 5.4e-193 678.3 629 57.9
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 9.3e-193 677.6 645 57.5
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.2e-192 677.2 625 57.9
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 1.6e-192 676.8 635 57.6
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 2.1e-192 676.4 631 58.5
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 7.9e-192 674.5 627 56.0
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 3.0e-191 672.5 688 54.1
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 1.9e-190 669.8 631 57.4
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 1.3e-189 667.2 641 57.7
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 1.6e-189 666.8 627 57.1
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 8.1e-189 664.5 620 57.1
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 6.9e-188 661.4 635 56.2
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 3.4e-187 659.1 628 55.9
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 3.4e-187 659.1 631 56.3
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 5.8e-187 658.3 628 55.9
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 5.8e-187 658.3 628 56.5
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 2.9e-186 656.0 630 55.7
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 2.4e-185 652.9 626 58.3
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 4.2e-185 652.1 642 56.1
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 1.2e-184 650.6 641 55.4
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 4.6e-184 648.7 632 55.5
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 6.0e-184 648.3 629 56.0
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 1.8e-183 646.7 625 56.0
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 3.9e-183 645.6 631 55.3
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 4.3e-182 642.1 639 54.6
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 3.7e-181 639.0 632 55.1
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 2.1e-176 623.2 631 52.9
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.1e-176 623.2 605 55.7
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 6.0e-176 621.7 628 55.6
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 1.0e-175 620.9 624 54.8
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 6.7e-175 618.2 619 53.6
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 2.1e-173 613.2 649 52.1
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 4.1e-172 609.0 632 51.9
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 7.6e-171 604.7 607 54.7
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.3e-170 604.0 568 56.7
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 5.0e-170 602.1 633 53.6
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 1.1e-169 600.9 616 53.2
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 2.5e-169 599.7 600 53.8
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 2.1e-168 596.7 557 56.7
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 6.1e-168 595.1 602 53.8
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 8.7e-167 591.3 626 53.5
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 7.4e-166 588.2 643 50.4
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.1e-164 584.3 604 52.3
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 2.3e-159 566.6 395 71.1
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 3.3e-158 562.8 629 50.4
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 1.7e-157 560.5 590 52.5
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 1.2e-155 554.3 634 49.1
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.1e-150 537.7 490 58.4
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 2.4e-148 530.0 629 46.6
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 2.3e-143 513.5 588 48.8
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 4.8e-141 505.8 631 49.4
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 2.0e-139 500.4 571 49.2
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 5.4e-124 449.1 645 42.0
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 2.8e-120 436.8 451 52.1
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 5.9e-115 419.1 648 39.2
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 2.3e-111 407.1 614 40.2
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 4.3e-105 386.3 405 51.4
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 2.1e-104 384.0 318 60.7
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 6.2e-104 382.5 251 72.5
Lalb_Chr05g0229851 Lupinus albus HOM05D005767 ORTHO05D006785 3.6e-88 330.1 388 49.2
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 5.4e-76 289.7 208 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 4.3e-65 253.4 469 35.8
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 8.7e-58 229.2 160 70.6
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.2e-54 218.8 231 50.2
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 1.3e-48 198.7 244 43.4
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 1.2e-43 182.2 209 48.8
Lsat_1_v5_gn_9_7060 Lactuca sativa HOM05D005767 ORTHO05D006785 5.1e-42 176.8 260 42.7
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 2.6e-41 174.5 285 39.3
Potri.005G113301 Populus trichocarpa HOM05D005767 ORTHO05D006785 4.4e-41 173.7 200 46.5
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.9e-37 161.0 131 53.4
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 3.8e-37 160.6 342 32.5
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 4.2e-36 157.1 132 60.6
CARHR244450 Cardamine hirsuta HOM05D005767 ORTHO05D006785 1.0e-34 152.5 311 36.3
MD15G1244800 Malus domestica HOM05D005767 ORTHO05D006785 1.3e-32 145.6 246 43.5
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.7e-32 145.2 438 29.5
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 2.8e-32 144.4 304 33.9
GSVIVG01018775001 Vitis vinifera HOM05D005767 ORTHO05D006785 7.0e-31 139.8 110 59.1
MD15G1245100 Malus domestica HOM05D005767 ORTHO05D006785 5.5e-28 130.2 159 50.9
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 7.2e-28 129.8 247 38.9
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 5.2e-26 123.6 499 26.5
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 2.0e-25 121.7 70 75.7
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 4.8e-24 117.1 74 77.0
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 1.4e-23 115.5 174 39.1
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.4e-23 114.8 110 51.8
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 4.5e-22 110.5 407 25.3
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.3e-21 109.0 304 28.3
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.7e-21 108.6 278 30.6
Eucgr.I02344 Eucalyptus grandis HOM05D005767 ORTHO05D006785 5.0e-21 107.1 216 36.6
MD15G1244900 Malus domestica HOM05D005767 ORTHO05D006785 1.1e-20 105.9 88 54.5
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 3.2e-20 104.4 278 29.5
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 3.2e-20 104.4 197 31.0
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 5.2e-18 97.1 277 27.1
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 8.8e-18 96.3 282 28.4
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 2.0e-17 95.1 278 27.3
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 3.4e-17 94.4 289 26.3
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 4.4e-17 94.0 280 27.9
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 7.5e-17 93.2 281 29.2
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 7.5e-17 93.2 278 27.3
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 9.8e-17 92.8 281 29.5
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-17 92.8 277 27.4
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-17 92.8 277 27.4
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 1.3e-16 92.4 282 28.0
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 1.7e-16 92.0 281 29.5
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 3.7e-16 90.9 279 28.3
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 3.7e-16 90.9 281 29.2
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 3.7e-16 90.9 280 27.1
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 3.7e-16 90.9 281 28.8
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 6.3e-16 90.1 281 27.0
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 1.4e-15 89.0 278 27.0
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 2.4e-15 88.2 278 25.5
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 2.4e-15 88.2 278 26.3
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 3.1e-15 87.8 279 25.8
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 3.1e-15 87.8 281 26.7
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 3.1e-15 87.8 282 26.6
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 1.2e-14 85.9 278 25.9
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 2.7e-14 84.7 273 26.4
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 2.7e-14 84.7 280 26.8
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 3.5e-14 84.3 276 25.7
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 4.5e-14 84.0 277 26.0
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 4.5e-14 84.0 278 26.3
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 7.7e-14 83.2 282 24.8
SMO356G0296 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.0e-13 82.8 361 26.6
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 2.3e-13 81.6 277 24.9
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 2.9e-13 81.3 278 26.3
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 2.9e-13 81.3 277 26.0
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 5.0e-13 80.5 277 24.5
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 6.5e-13 80.1 282 27.0
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 4.2e-12 77.4 41 78.0
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 7.2e-12 76.6 40 82.5
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 2.8e-11 74.7 290 24.8
PRCOL_00006578 Prasinoderma coloniale HOM05D005620 ORTHO05D002193 2.8e-11 74.7 273 25.6
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 3.6e-11 74.3 248 25.4
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 8.0e-11 73.2 273 26.7
Eucgr.I02345 Eucalyptus grandis HOM05D005767 ORTHO05D006785 2.6e-09 68.2 36 83.3
SEGI_27797 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.3e-08 65.9 285 28.1
CAN.G594.8 Capsicum annuum HOM05D005767 ORTHO05D006785 1.4e-07 62.4 68 50.0
Potri.005G113250 Populus trichocarpa HOM05D005767 ORTHO05D006785 1.4e-07 62.4 32 75.0
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 9.2e-07 59.7 70 42.9
MBI09_g09411_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.6e-06 58.9 48 60.4
SMO356G0207 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 4.5e-06 57.4 54 50.0


User provided reference genes

Program Settings