Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.973 Acer truncatum HOM05D000329 ORTHO05D000833 2.7e-166 588.6 297 100.0
Ciclev10018536m.g Citrus clementina HOM05D000329 ORTHO05D000833 1.3e-78 297.4 287 57.8
Potri.019G018700 Populus trichocarpa HOM05D000329 ORTHO05D000833 3.2e-58 229.6 287 50.9
CiPaw.08G118300 Carya illinoinensis HOM05D000329 ORTHO05D000833 2.7e-57 226.5 286 47.6
Potri.013G046700 Populus trichocarpa HOM05D000329 ORTHO05D000833 4.7e-57 225.7 292 50.3
QL03p030574 Quercus lobata HOM05D000329 ORTHO05D000833 1.8e-56 223.8 305 47.5
Dinv18443 Davidia involucrata HOM05D000329 ORTHO05D000833 4.4e-55 219.2 285 45.6
Dinv02198 Davidia involucrata HOM05D000329 ORTHO05D000833 8.2e-54 214.9 286 46.9
Sabra13G0042700 Salix brachista HOM05D000329 ORTHO05D000833 8.2e-54 214.9 291 48.8
Cpa.g.sc162.48 Carica papaya HOM05D000329 ORTHO05D000833 3.1e-53 213.0 283 46.6
Cfa006346 Carpinus fangiana HOM05D000329 ORTHO05D000833 4.1e-53 212.6 289 48.1
Thecc.05G271200 Theobroma cacao HOM05D000329 ORTHO05D000833 7.0e-53 211.8 289 48.4
Sabra19G0031700 Salix brachista HOM05D000329 ORTHO05D000833 9.1e-53 211.5 287 48.4
Manes.08G139400 Manihot esculenta HOM05D000329 ORTHO05D000833 9.4e-50 201.4 287 47.7
Duzib177G0926 Durio zibethinus HOM05D000329 ORTHO05D000833 8.0e-49 198.4 288 46.9
Duzib128G0509 Durio zibethinus HOM05D000329 ORTHO05D000833 1.5e-47 194.1 288 46.2
Gohir.D11G257900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 7.4e-47 191.8 289 47.1
TWI36G0726 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 7.4e-47 191.8 287 43.9
Actinidia03305 Actinidia chinensis HOM05D000329 ORTHO05D000833 1.3e-46 191.0 286 44.1
Gorai.007G276200 Gossypium raimondii HOM05D000329 ORTHO05D000833 1.4e-45 187.6 290 46.9
Gohir.A11G247600 Gossypium hirsutum HOM05D000329 ORTHO05D000833 1.8e-45 187.2 289 46.7
GSVIVG01023517001 Vitis vinifera HOM05D000329 ORTHO05D000833 2.6e-44 183.3 287 44.3
Prupe.6G349900 Prunus persica HOM05D000329 ORTHO05D000833 1.0e-43 181.4 282 45.0
Actinidia40000 Actinidia chinensis HOM05D000329 ORTHO05D000833 3.8e-43 179.5 286 42.7
RcHm_v2.0_Chr3g0449611 Rosa chinensis HOM05D000329 ORTHO05D000833 4.2e-42 176.0 273 44.3
COL.COLO4_15474 Corchorus olitorius HOM05D000329 ORTHO05D000833 9.4e-42 174.9 295 42.4
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 8.8e-40 168.3 280 41.4
MD04G1229800 Malus domestica HOM05D000329 ORTHO05D000833 7.5e-39 165.2 276 43.1
CANSAT54G0692 Cannabis sativa HOM05D000329 ORTHO05D000833 2.8e-38 163.3 288 43.1
TAR636G2871 Trochodendron aralioides HOM05D000329 ORTHO05D000833 6.3e-38 162.2 300 39.0
MD12G1246900 Malus domestica HOM05D000329 ORTHO05D000833 1.4e-37 161.0 283 41.3
Rhsim05G0172700 Rhododendron simsii HOM05D000329 ORTHO05D000833 2.7e-36 156.8 288 39.6
vmacro19991 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 1.7e-35 154.1 283 39.2
FvH4_6g01870 Fragaria vesca HOM05D000329 ORTHO05D000833 2.2e-35 153.7 295 38.6
Lj2A42T56 Lonicera japonica HOM05D000329 ORTHO05D000833 2.9e-35 153.3 277 40.4
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 8.5e-35 151.8 287 39.7
FAN02G0354 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.5e-34 151.0 300 38.0
FAN14G5850 Fragaria x ananassa HOM05D000329 ORTHO05D000833 4.2e-34 149.4 304 37.8
TAR362G0314 Trochodendron aralioides HOM05D000329 ORTHO05D000833 4.2e-34 149.4 280 40.0
FAN14G4488 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.6e-33 147.5 313 37.1
FAN09G3312 Fragaria x ananassa HOM05D000329 ORTHO05D000833 6.1e-33 145.6 304 37.2
Eucgr.B02147 Eucalyptus grandis HOM05D000329 ORTHO05D000833 8.0e-33 145.2 264 37.9
Manes.09G148100 Manihot esculenta HOM05D000329 ORTHO05D000833 8.0e-33 145.2 274 40.9
Ca_09959_v3 Cicer arietinum L. HOM05D000329 ORTHO05D000833 3.0e-32 143.3 287 40.8
Psat6g052840 Pisum sativum HOM05D000329 ORTHO05D000833 5.2e-32 142.5 285 39.3
TPR.G10536 Trifolium pratense HOM05D000329 ORTHO05D000833 1.2e-31 141.4 292 39.4
Aqoxy2G03663 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 2.0e-31 140.6 319 37.3
Medtr1g078070 Medicago truncatula HOM05D000329 ORTHO05D000833 1.7e-30 137.5 292 38.0
Gohir.D13G173000 Gossypium hirsutum HOM05D000329 ORTHO05D000833 2.4e-29 133.7 277 39.7
Gorai.013G187600 Gossypium raimondii HOM05D000329 ORTHO05D000833 2.4e-29 133.7 277 39.7
CsaV3_2G009730 Cucumis sativus L. HOM05D000329 ORTHO05D000833 4.1e-29 132.9 301 36.2
Lj5g0015689 Lotus japonicus HOM05D000329 ORTHO05D000833 4.1e-29 132.9 288 40.6
Lalb_Chr06g0168561 Lupinus albus HOM05D000329 ORTHO05D000833 5.4e-29 132.5 289 37.7
TAR365G0120 Trochodendron aralioides HOM05D000329 ORTHO05D000833 7.0e-29 132.1 304 35.9
Glyma.10G171900 Glycine max HOM05D000329 ORTHO05D000833 1.2e-28 131.3 289 38.4
PGR142G3887 Punica granatum HOM05D000329 ORTHO05D000833 1.2e-28 131.3 276 38.8
MELO3C008714.2 Cucumis melo HOM05D000329 ORTHO05D000833 1.6e-28 131.0 302 35.8
Hma1.2p1_0075F.1_g039240 Hydrangea macrophylla HOM05D000329 ORTHO05D000833 2.7e-28 130.2 240 39.2
Gohir.A13G167600 Gossypium hirsutum HOM05D000329 ORTHO05D000833 1.7e-27 127.5 277 39.0
ClCG11G010660 Citrullus lanatus HOM05D000329 ORTHO05D000833 2.9e-27 126.7 302 34.1
Phvul.007G117400 Phaseolus vulgaris HOM05D000329 ORTHO05D000833 5.0e-27 125.9 286 37.4
Nn3g19681 Nelumbo nucifera HOM05D000329 ORTHO05D000833 1.9e-26 124.0 310 35.2
Sed0008276 Sechium edule HOM05D000329 ORTHO05D000833 1.9e-26 124.0 289 35.6
DCAR_018946 Daucus carota HOM05D000329 ORTHO05D000833 2.5e-26 123.6 240 38.8
MSTRG.8225 Avicennia marina HOM05D000329 ORTHO05D000833 4.2e-26 122.9 289 36.3
CSS0002419 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D000833 7.2e-26 122.1 271 34.3
Glyma.20G218400 Glycine max HOM05D000329 ORTHO05D000833 9.5e-26 121.7 286 37.1
Lalb_Chr02g0149521 Lupinus albus HOM05D000329 ORTHO05D000833 1.2e-25 121.3 284 38.0
arahy.Tifrunner.gnm1.ann1.WQ4R53 Arachis hypogaea HOM05D000329 ORTHO05D000833 1.8e-24 117.5 291 36.1
Cc02_g08870 Coffea canephora HOM05D000329 ORTHO05D000833 3.0e-24 116.7 228 37.7
Peaxi162Scf00528g00121 Petunia axillaris HOM05D000329 ORTHO05D000833 3.4e-23 113.2 277 34.7
VMungo0720G0623 Vigna mungo HOM05D000329 ORTHO05D000833 3.4e-23 113.2 280 35.4
Nitab4.5_0010738g0020 Nicotiana tabacum HOM05D000329 ORTHO05D000833 7.5e-23 112.1 277 32.5
Hund06907 Selenicereus undatus HOM05D000329 ORTHO05D000833 3.7e-22 109.8 231 37.7
MBI07_g16915_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 1.8e-21 107.5 308 29.9
Oeu025619.1 Olea europaea HOM05D000329 ORTHO05D000833 9.2e-21 105.1 276 33.0
BcaB03g13323 Brassica carinata HOM05D000329 ORTHO05D000833 3.5e-20 103.2 292 32.9
CAN.G1609.14 Capsicum annuum HOM05D000329 ORTHO05D000833 5.9e-20 102.4 283 32.5
Sp1g07280 Schrenkiella parvula HOM05D000329 ORTHO05D000833 2.3e-19 100.5 289 33.2
CARHR008530 Cardamine hirsuta HOM05D000329 ORTHO05D000833 6.6e-19 99.0 275 34.9
SalBow3G0167 Salvia bowleyana HOM05D000329 ORTHO05D000833 8.6e-19 98.6 239 34.7
Nitab4.5_0003780g0120 Nicotiana tabacum HOM05D000329 ORTHO05D000833 1.5e-18 97.8 257 35.4
A08p35060 Brassica napus HOM05D000329 ORTHO05D000833 3.3e-18 96.7 276 34.8
BraA08t35415Z Brassica rapa HOM05D000329 ORTHO05D000833 7.3e-18 95.5 276 35.1
PGSC0003DMG400011477 Solanum tuberosum HOM05D000329 ORTHO05D000833 1.2e-17 94.7 274 32.1
Thhalv10006592m.g Eutrema salsugineum HOM05D000329 ORTHO05D000833 1.6e-17 94.4 286 33.6
PSO017G3797 Papaver somniferum HOM05D000329 ORTHO05D000833 1.6e-17 94.4 292 32.2
AL1G19050 Arabidopsis lyrata HOM05D000329 ORTHO05D000833 2.1e-17 94.0 279 35.5
AUR62004834 Chenopodium quinoa HOM05D000329 ORTHO05D000833 2.8e-17 93.6 236 34.3
Lsat_1_v5_gn_2_108161 Lactuca sativa HOM05D000329 ORTHO05D000833 2.8e-17 93.6 138 41.3
EL10Ac4g09004 Beta vulgaris HOM05D000329 ORTHO05D000833 3.6e-17 93.2 230 33.9
Aa31sc454G10 Aethionema arabicum HOM05D000329 ORTHO05D000833 6.1e-17 92.4 249 34.9
Carub.0001s0798 Capsella rubella HOM05D000329 ORTHO05D000833 6.1e-17 92.4 273 34.4
SalBow6G0863 Salvia bowleyana HOM05D000329 ORTHO05D000833 6.1e-17 92.4 59 67.8
PSO063G3989 Papaver somniferum HOM05D000329 ORTHO05D000833 8.0e-17 92.0 292 32.2
AUR62040922 Chenopodium quinoa HOM05D000329 ORTHO05D000833 1.0e-16 91.7 231 32.5
BolC8t48838H Brassica oleracea HOM05D000329 ORTHO05D000833 1.4e-16 91.3 276 32.6
Migut.F00801 Erythranthe guttata HOM05D000329 ORTHO05D000833 1.8e-16 90.9 230 33.0
Aqoxy5G00216 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 2.3e-16 90.5 242 31.4
AT1G08620 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 2.3e-16 90.5 277 33.9
BcaC07g38403 Brassica carinata HOM05D000329 ORTHO05D000833 2.3e-16 90.5 283 33.2
C08p11590 Brassica napus HOM05D000329 ORTHO05D000833 2.3e-16 90.5 283 33.2
Hund22162 Selenicereus undatus HOM05D000329 ORTHO05D000833 2.3e-16 90.5 231 35.5
Solyc04g009990.3 Solanum lycopersicum HOM05D000329 ORTHO05D000833 4.0e-16 89.7 274 32.5
Sopen04g005120 Solanum pennellii HOM05D000329 ORTHO05D000833 4.0e-16 89.7 271 31.7
CDE05G0450 Ceratophyllum demersum HOM05D000329 ORTHO05D000833 1.2e-15 88.2 49 79.6
C08p11630 Brassica napus HOM05D000329 ORTHO05D000833 3.4e-15 86.7 276 33.7
Lsat_1_v5_gn_8_3521 Lactuca sativa HOM05D000329 ORTHO05D000833 3.4e-15 86.7 50 72.0
THA.LOC104823761 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 3.4e-15 86.7 278 31.7
HanXRQChr14g0455281 Helianthus annuus HOM05D000329 ORTHO05D000833 7.5e-15 85.5 188 34.6
THA.LOC104805780 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 9.8e-15 85.1 297 32.0
C05p06700 Brassica napus HOM05D000329 ORTHO05D000833 1.3e-14 84.7 74 60.8
BolC5t29430H Brassica oleracea HOM05D000329 ORTHO05D000833 1.3e-14 84.7 74 60.8
Migut.F01543 Erythranthe guttata HOM05D000329 ORTHO05D000833 2.2e-14 84.0 54 68.5
ECA238G1839 Erigeron canadensis HOM05D000329 ORTHO05D000833 8.3e-14 82.0 171 36.3
Lsat_1_v5_gn_0_501 Lactuca sativa HOM05D000329 ORTHO05D000833 1.4e-13 81.3 82 54.9
HanXRQChr07g0194831 Helianthus annuus HOM05D000329 ORTHO05D000833 2.4e-13 80.5 203 32.5
Sc09g0004240 Simmondsia chinensis HOM05D000329 ORTHO05D000833 3.2e-13 80.1 284 32.0
Ah.04g163110 Amaranthus hybridus HOM05D000329 ORTHO05D000833 1.2e-12 78.2 218 34.4
unitig_37.g12444 Utricularia gibba HOM05D000329 ORTHO05D000833 1.2e-12 78.2 136 36.0
BcaB07g34103 Brassica carinata HOM05D000329 ORTHO05D000833 7.8e-12 75.5 294 29.6
SGA_v2.0_scaffold2G01009 Striga asiatica HOM05D000329 ORTHO05D000833 5.0e-11 72.8 120 38.3
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 1.9e-10 70.9 244 30.7
Os05g0196500 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D000833 5.6e-10 69.3 100 46.0
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 9.5e-10 68.6 244 29.5
ATR0736G175 Amborella trichopoda HOM05D000329 ORTHO05D000833 2.8e-09 67.0 41 70.7
HPP92_008601 Vanilla planifolia HOM05D000329 ORTHO05D000833 4.7e-09 66.2 119 37.0
HPP92_005135 Vanilla planifolia HOM05D000329 ORTHO05D000833 6.2e-09 65.9 85 48.2
Zm00001eb280460 Zea mays HOM05D000329 ORTHO05D000833 6.2e-09 65.9 84 48.8


User provided reference genes

Program Settings