Gene: PGSC0003DMG400011477

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400011477
  • Transcript Identifier PGSC0003DMT400029866
  • Gene Type Coding gene
  • Location ST4.03ch04 : 6249000-6255284 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37471964
  • id PGSC0003DMG400011477.v4.03
  • uniprot M1ATH2

Descriptions

  • Description Transcription factor jumonji family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0016577
IEA
GOA Databasehistone demethylation
GO:0006338
IBA
GOA Databasechromatin remodeling
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic Os05g0196500
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os05g0196500
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G38950
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT1G63490

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034647
IBA
GOA Databasehistone demethylase activity (H3-trimethyl-K4 specific)
GO:0032452
IBA
GOA Databasehistone demethylase activity
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G63490
GO:0008198
ISO
PLAZA Integrative Orthologyferrous iron binding Os05g0196500
GO:0032453
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K4 specific) Os05g0196500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003349 JmjN domain
IPR003347 JmjC domain
IPR003888 FY-rich, N-terminal
IPR003889 FY-rich, C-terminal
IPR004198 Zinc finger, C5HC2-type
Mapman id Description
12.3.3.8.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM7)