Gene: AT1G08620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G08620
  • Transcript Identifier AT1G08620.2
  • Gene Type Coding gene
  • Location Chr1 : 2737554-2743370 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G08620.2
  • symbol PKDM7D
  • uniprot C0SUT9

Descriptions

  • Description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
  • Computational description PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 1159; Fungi - 446; Plants - 392; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
  • Computational description PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
GOA Databasechromatin organization
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os05g0196500
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic Os05g0196500
GO:0016577
IEA
GOA Databasehistone demethylation
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032453
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K4 specific) Os05g0196500
GO:0008198
ISO
PLAZA Integrative Orthologyferrous iron binding Os05g0196500
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0032452
IBA
Gene Ontologyhistone demethylase activity1
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003888 FY-rich, N-terminal
IPR003347 JmjC domain
IPR003889 FY-rich, C-terminal
IPR003349 JmjN domain
IPR004198 Zinc finger, C5HC2-type
Mapman id Description
12.3.3.8.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM7)