Gene: Sopen04g005120

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g005120
  • Transcript Identifier Sopen04g005120.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 3486258-3492586 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g005120.1

Descriptions

  • Description PKDM7D | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , FY-rich, C-terminal , FY-rich, N-terminal , Transcription factor jumonji, JmjN , Zinc finger, C5HC2-type , FY-rich, C-terminal subgroup , Transcription factor jumonji , FY-rich, N-terminal subgroup | BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic Os05g0196500
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os05g0196500
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G38950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008198
ISO
PLAZA Integrative Orthologyferrous iron binding Os05g0196500
GO:0032453
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K4 specific) Os05g0196500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003889 FY-rich, C-terminal
IPR003347 JmjC domain
IPR003888 FY-rich, N-terminal
IPR003349 JmjN domain
IPR004198 Zinc finger, C5HC2-type
Mapman id Description
12.3.3.8.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM7)