Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1794 Acer truncatum HOM05D005238 ORTHO05D006337 7.2e-131 471.5 440 100.0
Ciclev10020284m.g Citrus clementina HOM05D005238 ORTHO05D006337 3.7e-58 229.9 248 79.8
Manes.06G171800 Manihot esculenta HOM05D005238 ORTHO05D006337 2.2e-55 220.7 373 60.3
CARHR017080 Cardamine hirsuta HOM05D005238 ORTHO05D006337 4.6e-53 213.0 333 59.2
Cpa.g.sc10.47 Carica papaya HOM05D005238 ORTHO05D006337 6.7e-52 209.1 376 69.4
TAR627G0595 Trochodendron aralioides HOM05D005238 ORTHO05D006337 3.7e-50 203.4 377 65.0
Gorai.013G178100 Gossypium raimondii HOM05D005238 ORTHO05D006337 1.8e-49 201.1 345 58.8
Glyma.15G255400 Glycine max HOM05D005238 ORTHO05D006337 6.9e-49 199.1 360 69.2
Potri.011G143100 Populus trichocarpa HOM05D005238 ORTHO05D006337 9.0e-49 198.7 374 62.0
Glyma.08G172000 Glycine max HOM05D005238 ORTHO05D006337 2.6e-48 197.2 360 68.6
Lj3g0001441 Lotus japonicus HOM05D005238 ORTHO05D006337 1.1e-46 191.8 365 62.7
Dinv19619 Davidia involucrata HOM05D005238 ORTHO05D006337 1.4e-46 191.4 362 66.6
Dinv42511 Davidia involucrata HOM05D005238 ORTHO05D006337 2.5e-46 190.7 184 59.2
Gohir.D01G026800 Gossypium hirsutum HOM05D005238 ORTHO05D006337 2.5e-46 190.7 178 62.9
Manes.14G016200 Manihot esculenta HOM05D005238 ORTHO05D006337 7.2e-46 189.1 338 70.7
BcaC05g25524 Brassica carinata HOM05D005238 ORTHO05D006337 3.5e-45 186.8 332 63.0
Phvul.005G056900 Phaseolus vulgaris HOM05D005238 ORTHO05D006337 3.5e-45 186.8 338 63.9
Thecc.07G152800 Theobroma cacao HOM05D005238 ORTHO05D006337 3.5e-45 186.8 372 62.4
Hma1.2p1_0334F.1_g128770 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 4.6e-45 186.4 379 64.4
Cc05_g16060 Coffea canephora HOM05D005238 ORTHO05D006337 1.8e-44 184.5 355 58.9
Gohir.D13G157300 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.8e-44 184.5 155 65.8
CSS0024118 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 3.0e-44 183.7 380 50.8
MBI16_g40051_MAGBIO Magnolia biondii HOM05D005238 ORTHO05D006337 3.0e-44 183.7 179 61.5
VMungo1080G1161 Vigna mungo HOM05D005238 ORTHO05D006337 3.0e-44 183.7 338 63.0
Gohir.A13G153000 Gossypium hirsutum HOM05D005238 ORTHO05D006337 6.7e-44 182.6 378 58.2
Duzib187G0607 Durio zibethinus HOM05D005238 ORTHO05D006337 8.7e-44 182.2 149 65.8
Duzib213G1032 Durio zibethinus HOM05D005238 ORTHO05D006337 8.7e-44 182.2 377 58.9
QL04p073782 Quercus lobata HOM05D005238 ORTHO05D006337 1.1e-43 181.8 178 57.9
Lalb_Chr20g0108761 Lupinus albus HOM05D005238 ORTHO05D006337 2.5e-43 180.6 357 68.3
FvH4_3g15770 Fragaria vesca HOM05D005238 ORTHO05D006337 3.3e-43 180.3 344 54.1
Nn6g31521 Nelumbo nucifera HOM05D005238 ORTHO05D006337 4.3e-43 179.9 371 60.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-42 178.3 344 53.8
Gohir.D01G026750 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.3e-42 178.3 150 65.3
MSTRG.7059 Avicennia marina HOM05D005238 ORTHO05D006337 1.6e-42 177.9 355 56.1
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 1.6e-42 177.9 408 56.9
PSO782G5275 Papaver somniferum HOM05D005238 ORTHO05D006337 2.2e-42 177.6 363 64.5
GSVIVG01020424001 Vitis vinifera HOM05D005238 ORTHO05D006337 2.2e-42 177.6 388 57.2
BolC5t30204H Brassica oleracea HOM05D005238 ORTHO05D006337 2.8e-42 177.2 332 63.3
Prupe.4G139800 Prunus persica HOM05D005238 ORTHO05D006337 2.8e-42 177.2 177 57.6
BcaC07g38806 Brassica carinata HOM05D005238 ORTHO05D006337 6.3e-42 176.0 357 51.3
arahy.Tifrunner.gnm1.ann1.7NR7Q4 Arachis hypogaea HOM05D005238 ORTHO05D006337 1.1e-41 175.3 177 61.6
Eucgr.F03179 Eucalyptus grandis HOM05D005238 ORTHO05D006337 1.1e-41 175.3 393 59.0
MD10G1202400 Malus domestica HOM05D005238 ORTHO05D006337 1.1e-41 175.3 181 58.6
AT1G16610 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 1.4e-41 174.9 185 59.5
AL1G28770 Arabidopsis lyrata HOM05D005238 ORTHO05D006337 1.8e-41 174.5 182 57.1
C05p14890 Brassica napus HOM05D005238 ORTHO05D006337 2.4e-41 174.1 332 62.7
vmacro11663 Vaccinium macrocarpon HOM05D005238 ORTHO05D006337 2.4e-41 174.1 372 54.8
Sp1g14750 Schrenkiella parvula HOM05D005238 ORTHO05D006337 3.1e-41 173.7 151 61.6
C08p17490 Brassica napus HOM05D005238 ORTHO05D006337 4.1e-41 173.3 361 51.5
Cfa002698 Carpinus fangiana HOM05D005238 ORTHO05D006337 4.1e-41 173.3 252 66.7
arahy.Tifrunner.gnm1.ann1.K2PXHZ Arachis hypogaea HOM05D005238 ORTHO05D006337 6.9e-41 172.6 177 60.5
Carub.0001s1636 Capsella rubella HOM05D005238 ORTHO05D006337 6.9e-41 172.6 179 59.8
PSO170G6647 Papaver somniferum HOM05D005238 ORTHO05D006337 6.9e-41 172.6 374 65.0
Oeu003828.2 Olea europaea HOM05D005238 ORTHO05D006337 1.2e-40 171.8 178 54.5
TPR.G9757 Trifolium pratense HOM05D005238 ORTHO05D006337 1.5e-40 171.4 380 53.7
Nitab4.5_0008429g0030 Nicotiana tabacum HOM05D005238 ORTHO05D006337 2.6e-40 170.6 360 55.3
BolC8t49374H Brassica oleracea HOM05D005238 ORTHO05D006337 3.4e-40 170.2 369 50.4
FAN16G2086 Fragaria x ananassa HOM05D005238 ORTHO05D006337 3.4e-40 170.2 345 57.1
Haze_24974 Corylus avellana HOM05D005238 ORTHO05D006337 5.9e-40 169.5 157 61.8
Hma1.2p1_0637F.1_g193540 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 5.9e-40 169.5 349 63.9
TWI38G1616 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 1.0e-39 168.7 375 64.5
Actinidia07350 Actinidia chinensis HOM05D005238 ORTHO05D006337 1.3e-39 168.3 376 59.8
CANSAT80G2747 Cannabis sativa HOM05D005238 ORTHO05D006337 1.7e-39 167.9 177 55.4
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 2.9e-39 167.2 185 55.7
Migut.M01557 Erythranthe guttata HOM05D005238 ORTHO05D006337 6.5e-39 166.0 161 57.8
CiPaw.12G006900 Carya illinoinensis HOM05D005238 ORTHO05D006337 8.5e-39 165.6 379 59.1
Rhsim06G0238800 Rhododendron simsii HOM05D005238 ORTHO05D006337 8.5e-39 165.6 366 40.7
A08p31340 Brassica napus HOM05D000001 ORTHO05D000003 1.1e-38 165.2 155 60.0
Lj8A188G51 Lonicera japonica HOM05D005238 ORTHO05D006337 1.9e-38 164.5 155 59.4
Psat1g011080 Pisum sativum HOM05D005238 ORTHO05D006337 1.9e-38 164.5 367 58.3
TWI39G0564 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 2.5e-38 164.1 183 57.4
HanXRQChr03g0071621 Helianthus annuus HOM05D005238 ORTHO05D006337 3.2e-38 163.7 163 57.7
BraA09t41454Z Brassica rapa HOM05D005238 ORTHO05D006337 5.5e-38 162.9 371 57.4
Ca_03677_v3 Cicer arietinum L. HOM05D005238 ORTHO05D006337 5.5e-38 162.9 346 63.6
Lalb_Chr25g0284971 Lupinus albus HOM05D005238 ORTHO05D006337 5.5e-38 162.9 359 58.8
Aa31LG7G1130 Aethionema arabicum HOM05D005238 ORTHO05D006337 9.4e-38 162.2 358 59.2
BraA08t35057Z Brassica rapa HOM05D000001 ORTHO05D000003 1.2e-37 161.8 325 52.9
Medtr2g069490 Medicago truncatula HOM05D005238 ORTHO05D006337 1.6e-37 161.4 342 62.3
Oeu052006.1 Olea europaea HOM05D005238 ORTHO05D006337 2.7e-37 160.6 184 52.2
Gorai.002G036200 Gossypium raimondii HOM05D005238 ORTHO05D006337 4.6e-37 159.8 383 57.2
PGR031G1019 Punica granatum HOM05D005238 ORTHO05D006337 1.0e-36 158.7 372 60.5
Sopen10g001560 Solanum pennellii HOM05D005238 ORTHO05D006337 3.9e-36 156.8 376 56.6
SGA_v2.0_scaffold186G40218 Striga asiatica HOM05D005238 ORTHO05D006337 5.1e-36 156.4 154 57.8
C08p44400 Brassica napus HOM05D005238 ORTHO05D006337 8.8e-36 155.6 182 56.0
RcHm_v2.0_Chr5g0026571 Rosa chinensis HOM05D005238 ORTHO05D006337 8.8e-36 155.6 150 60.0
Solyc10g005590.4 Solanum lycopersicum HOM05D005238 ORTHO05D006337 1.5e-35 154.8 180 52.2
CSS0017399 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 2.0e-35 154.5 300 59.0
PGSC0003DMG400011240 Solanum tuberosum HOM05D005238 ORTHO05D006337 3.3e-35 153.7 180 51.7
THA.LOC104813616 Tarenaya hassleriana HOM05D005238 ORTHO05D006337 3.3e-35 153.7 358 58.9
FAN21G1113 Fragaria x ananassa HOM05D005238 ORTHO05D006337 4.3e-35 153.3 325 53.2
CDE01G0718 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 9.7e-35 152.1 148 60.1
ECA240G2789 Erigeron canadensis HOM05D005238 ORTHO05D006337 1.3e-34 151.8 327 54.7
ATR1136G058 Amborella trichopoda HOM05D005238 ORTHO05D006337 2.8e-34 150.6 333 61.0
SalBow8G4928 Salvia bowleyana HOM05D005238 ORTHO05D006337 1.1e-33 148.7 155 56.1
A09p60810 Brassica napus HOM05D005238 ORTHO05D006337 1.4e-33 148.3 181 55.2
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 1.8e-33 147.9 146 55.5
CsaV3_4G031880 Cucumis sativus L. HOM05D005238 ORTHO05D006337 3.1e-33 147.1 152 55.3
DCAR_013738 Daucus carota HOM05D005238 ORTHO05D006337 3.1e-33 147.1 155 57.4
Duzib268G1788 Durio zibethinus HOM05D005238 ORTHO05D006337 4.1e-33 146.7 104 73.1
EL10Ac2g03318 Beta vulgaris HOM05D005238 ORTHO05D006337 5.3e-33 146.4 182 57.7
A06p12590 Brassica napus HOM05D005238 ORTHO05D006337 5.3e-33 146.4 363 58.7
CDE12G0696 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 5.3e-33 146.4 142 59.2
BolC8t51981H Brassica oleracea HOM05D005238 ORTHO05D006337 6.9e-33 146.0 181 54.7
BraA06t24421Z Brassica rapa HOM05D005238 ORTHO05D006337 9.1e-33 145.6 363 58.7
Gohir.A01G039100 Gossypium hirsutum HOM05D005238 ORTHO05D006337 4.5e-32 143.3 382 55.8
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 5.9e-32 142.9 336 52.1
unitig_748.g7636 Utricularia gibba HOM05D005238 ORTHO05D006337 7.7e-32 142.5 346 48.8
PSO017G0328 Papaver somniferum HOM05D005238 ORTHO05D006337 1.0e-31 142.1 155 52.3
HPP92_011420 Vanilla planifolia HOM05D005238 ORTHO05D006337 1.3e-31 141.7 147 55.8
AUR62043127 Chenopodium quinoa HOM05D005238 ORTHO05D006337 2.2e-31 141.0 155 57.4
Lsat_1_v5_gn_7_65541 Lactuca sativa HOM05D005238 ORTHO05D006337 2.2e-31 141.0 139 56.1
Peaxi162Scf00018g00105 Petunia axillaris HOM05D005238 ORTHO05D006337 2.2e-31 141.0 154 51.3
ClCG11G016430 Citrullus lanatus HOM05D005238 ORTHO05D006337 2.9e-31 140.6 442 65.6
PSO170G0319 Papaver somniferum HOM05D005238 ORTHO05D006337 5.0e-31 139.8 147 53.1
AUR62039165 Chenopodium quinoa HOM05D005238 ORTHO05D006337 2.5e-30 137.5 153 56.9
SEGI_37868 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 2.5e-30 137.5 377 52.5
MELO3C026965.2 Cucumis melo HOM05D005238 ORTHO05D006337 5.5e-30 136.3 421 63.9
DCAR_016821 Daucus carota HOM05D005238 ORTHO05D006337 7.2e-30 136.0 364 49.7
Thhalv10007778m.g Eutrema salsugineum HOM05D005238 ORTHO05D006337 2.7e-29 134.0 147 56.5
Zm00001eb362580 Zea mays HOM05D005238 ORTHO05D006337 2.7e-29 134.0 142 53.5
Mapoly0011s0143 Marchantia polymorpha HOM05D005238 ORTHO05D006337 2.3e-28 131.0 179 46.4
Aqoxy6G00105 Aquilegia oxysepala HOM05D005238 ORTHO05D006337 3.0e-28 130.6 354 59.6
SEGI_03141 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 6.7e-28 129.4 169 50.3
Aa31LG4G1900 Aethionema arabicum HOM05D005238 ORTHO05D006337 4.4e-27 126.7 177 46.3
Pp3c8_3970 Physcomitrium patens HOM05D005238 ORTHO05D006337 5.7e-27 126.3 183 43.7
Os01g0959000 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 8.2e-26 122.5 128 53.1
Zm00001eb140450 Zea mays HOM05D005238 ORTHO05D006337 7.7e-24 115.9 304 59.9
HPP92_027055 Vanilla planifolia HOM05D005238 ORTHO05D006337 2.2e-23 114.4 182 45.6
Pp3c12_22790 Physcomitrium patens HOM05D005238 ORTHO05D006337 2.5e-22 110.9 145 47.6
Sed0003933 Sechium edule HOM05D005238 ORTHO05D006337 2.5e-22 110.9 344 60.2
Os05g0105900 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 3.2e-22 110.5 357 52.9
Nitab4.5_0000611g0070 Nicotiana tabacum HOM05D005238 ORTHO05D006337 1.7e-18 98.2 120 45.8
Sc06g0001540 Simmondsia chinensis HOM05D005238 ORTHO05D006337 4.8e-18 96.7 114 50.0
SMO271G0048 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 1.1e-17 95.5 161 37.3
PSO063G3689 Papaver somniferum HOM05D005238 ORTHO05D006337 7.7e-16 89.4 82 61.0
Pp3c3_28550 Physcomitrium patens HOM05D005238 ORTHO05D006337 3.2e-14 84.0 95 52.6
CAN.G24.9 Capsicum annuum HOM05D005238 ORTHO05D006337 7.2e-14 82.8 75 57.3
CBR_g46302 Chara braunii HOM05D005238 ORTHO05D006337 1.2e-13 82.0 159 34.6
SMO364G0823 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 2.0e-11 74.7 105 39.0
Cre03.g164950 Chlamydomonas reinhardtii HOM05D005238 ORTHO05D006337 5.7e-11 73.2 104 40.4
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 5.4e-09 66.6 75 46.7
AT1G79100 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 7.7e-08 62.8 44 63.6
SGA_v2.0_scaffold7G03583 Striga asiatica HOM05D005238 ORTHO05D006337 7.7e-08 62.8 61 60.7
PGSC0003DMG400008817 Solanum tuberosum HOM05D001197 ORTHO05D000124 7.2e-06 56.2 96 33.3


User provided reference genes

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