Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.2e-93 346.7 205 100.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 8.7e-79 297.4 205 86.3
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 9.6e-78 293.9 205 85.4
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.3e-77 293.5 205 85.4
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.3e-77 293.5 205 85.4
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 3.6e-77 292.0 206 87.9
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.5e-75 286.6 204 87.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.6e-75 285.8 206 85.0
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 4.5e-75 285.0 204 85.8
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 4.5e-75 285.0 196 88.3
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 9.9e-75 283.9 203 87.7
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.9e-74 282.3 206 85.0
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 5.5e-73 278.1 205 84.4
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 9.3e-73 277.3 203 86.2
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.1e-72 276.2 205 81.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.1e-72 276.2 207 84.5
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 4.6e-72 275.0 204 85.8
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.0e-71 273.9 203 79.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.3e-71 273.5 205 85.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.3e-71 273.5 205 81.5
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.9e-71 271.9 206 82.0
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 5.1e-71 271.6 206 81.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.1e-70 270.4 205 80.0
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.9e-70 269.6 206 81.1
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.3e-70 268.5 206 82.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 5.6e-70 268.1 205 80.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 5.6e-70 268.1 204 82.8
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 5.6e-70 268.1 206 81.1
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 7.4e-70 267.7 202 84.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 9.6e-70 267.3 205 80.5
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.3e-69 266.9 200 81.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.3e-69 266.9 205 75.1
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.6e-69 266.5 206 82.0
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-69 266.2 206 78.2
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.1e-69 266.2 207 80.7
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.1e-69 266.2 205 80.0
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.1e-69 266.2 205 80.0
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.1e-69 266.2 206 81.1
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 81.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.8e-69 265.0 206 82.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 6.2e-69 264.6 206 82.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.4e-68 263.5 203 82.3
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.4e-68 263.5 207 73.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.4e-68 263.5 203 78.3
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.8e-68 263.1 201 81.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.8e-68 263.1 202 83.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.8e-68 263.1 206 80.1
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.8e-68 263.1 206 82.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.8e-68 263.1 206 82.0
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.8e-68 263.1 206 79.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.4e-68 262.7 201 77.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 3.1e-68 262.3 206 78.6
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.1e-68 262.3 201 79.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 4.0e-68 261.9 206 79.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.0e-68 261.9 206 79.1
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.3e-68 261.5 199 76.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 5.3e-68 261.5 205 79.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.3e-68 261.5 203 82.8
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.9e-68 261.2 206 81.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 6.9e-68 261.2 206 81.6
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 6.9e-68 261.2 203 82.3
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 9.0e-68 260.8 201 76.1
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.5e-67 260.0 205 79.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.5e-67 260.0 203 82.8
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.0e-67 259.6 196 83.7
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.0e-67 259.6 205 80.0
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.0e-67 259.6 198 81.8
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.6e-67 259.2 204 82.4
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 3.4e-67 258.8 205 77.1
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.4e-67 258.8 205 78.0
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 3.4e-67 258.8 198 82.3
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.4e-67 258.8 201 78.6
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 4.5e-67 258.5 198 81.3
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.8e-67 258.1 203 77.3
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 7.6e-67 257.7 206 78.6
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.0e-66 257.3 203 82.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.8e-66 255.4 212 76.9
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.9e-66 255.0 212 76.9
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 4.9e-66 255.0 201 80.6
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.1e-65 253.8 201 75.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-65 253.8 212 76.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.1e-65 253.8 201 75.1
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.2e-65 252.3 206 76.7
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 3.2e-65 252.3 201 81.1
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 7.1e-65 251.1 201 75.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 7.1e-65 251.1 201 74.1
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-64 250.0 201 80.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-64 250.0 201 80.1
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 6.0e-64 248.1 249 67.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 7.9e-64 247.7 203 80.3
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 7.9e-64 247.7 201 74.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.3e-63 246.1 199 77.4
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.1e-62 243.8 156 82.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.5e-62 242.7 200 75.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.3e-62 241.9 156 81.4
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.8e-61 239.2 172 86.6
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.7e-61 238.8 203 72.9
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 4.8e-61 238.4 205 76.6
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.8e-60 236.5 204 70.1
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.0e-60 234.2 205 73.2
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 9.0e-60 234.2 209 74.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.5e-59 233.4 200 72.5
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.4e-59 232.3 197 79.2
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.6e-59 231.1 220 59.1
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.6e-59 231.1 277 57.4
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.3e-57 224.2 163 85.9
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.0e-55 220.7 294 55.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.3e-55 220.3 146 72.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.5e-54 216.1 198 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.7e-54 214.9 145 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.4e-52 210.3 138 75.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.7e-51 204.5 205 63.9
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.8e-50 202.2 205 67.8
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.1e-48 196.4 198 71.2
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.1e-48 196.4 202 60.4
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.6e-48 195.7 110 87.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.1e-48 194.9 223 54.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.1e-44 184.1 159 77.4
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 7.7e-43 177.9 225 61.8
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.7e-42 176.8 149 68.5
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.3e-39 166.4 213 61.5
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 5.2e-39 165.2 141 63.1
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.7e-38 161.0 125 72.0
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.2e-37 159.8 225 49.3
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.1e-33 147.5 125 79.2
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.7e-32 142.9 236 48.7
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.7e-32 142.1 286 47.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 5.2e-31 138.7 202 44.6
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.6e-24 117.1 210 45.2
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.4e-22 109.0 150 47.3
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.1e-16 88.6 211 37.4
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 6.1e-16 88.6 97 71.1
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 3.0e-15 86.3 92 72.8
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.6e-11 73.9 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.7e-10 70.5 166 27.7


User provided reference genes

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